DRSC/TRiP Functional Genomics Resources

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Protein Alignment Jarid2 and ATPsynbetaL

DIOPT Version :10

Sequence 1:NP_648324.1 Gene:Jarid2 / 39103 FlyBaseID:FBgn0036004 Length:2351 Species:Drosophila melanogaster
Sequence 2:NP_648836.2 Gene:ATPsynbetaL / 39761 FlyBaseID:FBgn0036568 Length:622 Species:Drosophila melanogaster


Alignment Length:686 Identity:130/686 - (18%)
Similarity:196/686 - (28%) Gaps:287/686 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    74 SAAAAAAGSGSGPSTSGADSNQPPIEILPNKCPKPQDFLTFLCFRGTRALPAHL---DFLNQGKS 135
            :.|.|..|...||.|.|...|     .|.|....|            |.|.|.|   |..::.||
  Fly     9 ATACARIGLKMGPGTGGYRGN-----YLGNPVVFP------------RYLHASLSLWDDKDKKKS 56

  Fly   136 KD------SEASSTGA---NNNNNARKPNNSRASLAGNKKKRGRPAKGATKKVDVVAP------- 184
            .|      .|...|.|   ...:.|......:.|..|.||...:..||....  |:.|       
  Fly    57 GDECEPEPQEVCKTDAELVKKKDEAEDECEEKKSDGGGKKLESKGRKGVIHA--VIGPVIDVYFE 119

  Fly   185 --IPDPTEKPSTAEKPASD---------KNNLIAAEA-----------PKIPSRNPTPVLPG--- 224
              :|:........:.|.::         .||::...|           |.:.:..|..|..|   
  Fly   120 EEVPEVLNALQVQDAPIANLVLEVFHHLGNNIVRCVAMDSTEGLRRGQPVLDTGYPIRVAVGKAV 184

  Fly   225 ----------AVRKRAEVVTD-------------------------------------GNRRGAR 242
                      .:..|.||.:|                                     |.:.|..
  Fly   185 LGRILNVVGDPIDDRGEVKSDFYSFIHNEAPELTDLSVKPEILVTGIKVIDLLAPYVKGGKIGLF 249

  Fly   243 GRGAGI---------------SHDKTTPAALSKDNKRRSNRASTK--ESKPV-IDDDNSE----- 284
            | |||:               ||...:....:.:..|..|....:  |||.: ::||:|:     
  Fly   250 G-GAGVGKTVLIMELINNIAKSHGGYSVFVGAGERTREGNDLYHEMIESKVISLEDDSSKVVLVF 313

  Fly   285 -------------------------DLDEQEADDDEDEFFSAHDATSRNGEEVKA-----DSPVK 319
                                     |:|.|:.....|..|....|    |.||.|     .|.|.
  Fly   314 GQMNEPPGARSRVVLTGLTIAEYFRDVDGQDVLLFIDNIFRFTQA----GSEVSALLGRIPSAVG 374

  Fly   320 AEP---------------TKRGRPSAAKKAVEPAPEGQTVLKDKAPVKRVRQRESPIFIPSP--- 366
            .:|               |:.|..::.:....||.:    |.|.||.......::...:..|   
  Fly   375 YQPTLGTDMGTMQERITSTRNGSITSVQAVYVPADD----LSDPAPAATFSHLDATTVLSRPIAE 435

  Fly   367 ----------ESSGRMTRQRAFFEPVKVPPHKEEPGAHDPPKDEPKKQPETPPSKTEKEQEPTKQ 421
                      :||.|:.                     ||  |...::........:|..:..|.
  Fly   436 LGIYPAVDPLDSSSRIL---------------------DP--DVVGEEHYNVARAVQKTLQAYKS 477

  Fly   422 IKEAKEKTNSSIYAKEAKQQLENGDSLHGAVAKG------------------------------- 455
            :::        |.|.....:|...|.|..|.|:.                               
  Fly   478 LQD--------IIAILGMDELSEEDKLTVARARKMQRFLSQPFQVAEIFTGHPGKLVPVEKCVEG 534

  Fly   456 -KKSLN---------VFDFSSDDEQPLAKSIKLKKGAKGASPKKGGAAPIAPAARNRKAAAKKLD 510
             |:.||         .|....|.|:.|||:.:|.....|.:|         ||    ||.||| |
  Fly   535 FKRLLNGEYDDIPEIAFYMVGDAEEVLAKATQLAASMSGDAP---------PA----KAEAKK-D 585

  Fly   511 KEKEIEKEKQREKEEEIERDKAKEKKDKEKEKEKEK 546
            ::|:.:.|:.:::|.....||.:|.|| :|.||.||
  Fly   586 EKKDTKPEEGKKEEPPKGEDKKEEAKD-DKPKEPEK 620

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Jarid2NP_648324.1 PHA03247 <157..429 CDD:223021 67/431 (16%)
Atrophin-1 762..>986 CDD:460830
JmjN 1740..1781 CDD:128818
ARID_JARD2 1804..1915 CDD:350634
cupin_RmlC-like 2066..2181 CDD:477354
zf-C5HC2 2281..2334 CDD:460750
ATPsynbetaLNP_648836.2 AtpD 103..570 CDD:439825 80/508 (16%)
Blue background indicates that the domain is not in the aligned region.

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