DRSC/TRiP Functional Genomics Resources

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Protein Alignment Jarid2 and Kdm4A

DIOPT Version :10

Sequence 1:NP_648324.1 Gene:Jarid2 / 39103 FlyBaseID:FBgn0036004 Length:2351 Species:Drosophila melanogaster
Sequence 2:NP_610331.1 Gene:Kdm4A / 35744 FlyBaseID:FBgn0033233 Length:495 Species:Drosophila melanogaster


Alignment Length:376 Identity:85/376 - (22%)
Similarity:136/376 - (36%) Gaps:72/376 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly  1945 ESEEEIDGVSME-----C-IVKG-------------RSMPLSQFYRIARNTMALWFKSTDPTVNE 1990
            :|..:||.::|.     | :|.|             |.|.|.||...|.:.:....:..|  .::
  Fly    61 KSGYDIDNINMTIPAPICQVVTGAHGVYQQINIQQRRQMTLRQFMEKANSELHQTPRHFD--YDD 123

  Fly  1991 VEAEFWRHVAVRDSHVCVHSGSIDSSGWGYGFPSP----GPKGKGSNYARHPWN------LKVLT 2045
            :|.::|:::.                     :.||    ..||..|:.....||      :..|.
  Fly   124 LERKYWKNIT---------------------YISPLYAADVKGSLSDEDLDVWNIGRLDTILNLV 167

  Fly  2046 NNSGSVLRSLGPVMGVTVPTLHVGMLFSACCWYRDPHGLSWIEYLHTGASKLWYGIPDDQSANFR 2110
            |...:::     :.||....|:.||..|:..|:.:...|..|.|||.||.|.||.||........
  Fly   168 NTDYNII-----IDGVNTAYLYFGMWKSSFAWHTEDMDLYSINYLHFGAPKTWYAIPPAYGRRLE 227

  Fly  2111 AALTSLIPTHCQNKTIWLPCDTVMVPPHMLTDRGVSLCRIEQKPGEFIVVFPRAYTSSLATGYVV 2175
            .........:.|....:|.....|:.|.:|....:...:|.|:.||.::.||..|.:....|:..
  Fly   228 KLANETFSENYQECNAYLRHKMTMISPKVLRQHNIPYNKITQEAGEIMITFPFGYHAGFNHGFNG 292

  Fly  2176 SESVYFATMSWLDLAKDDFRDIHESCEPAMFSLEQLLFALGYDQRVNSEALHQMLPMLNDVCEKE 2240
            :||..||:..|::..|   |.....|...|..:....|.    :|...|.....|...:..|..|
  Fly   293 AESTNFASKRWIEYGK---RASICRCRSDMVKISMETFV----RRFQPERYDNWLKGQDMGCHPE 350

  Fly  2241 SAAREQLRAAGVTSTEKVQAEKGQKAKKQQQPPYKSIESECDL----CRAN 2287
            ...: ...||..|..|..:.|..:.||.:::.|.|   ..|.|    |..|
  Fly   351 EPGK-ICAAAPPTLNEYEKQENLRAAKSEEESPQK---RGCSLAGNGCERN 397

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Jarid2NP_648324.1 PHA03247 <157..429 CDD:223021
Atrophin-1 762..>986 CDD:460830
JmjN 1740..1781 CDD:128818
ARID_JARD2 1804..1915 CDD:350634
cupin_RmlC-like 2066..2181 CDD:477354 32/114 (28%)
zf-C5HC2 2281..2334 CDD:460750 4/11 (36%)
Kdm4ANP_610331.1 JmjN 17..59 CDD:472837
JmjC 182..298 CDD:396791 32/115 (28%)
Blue background indicates that the domain is not in the aligned region.

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