DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Jarid2 and Utx

DIOPT Version :9

Sequence 1:NP_648324.1 Gene:Jarid2 / 39103 FlyBaseID:FBgn0036004 Length:2351 Species:Drosophila melanogaster
Sequence 2:NP_609368.3 Gene:Utx / 34377 FlyBaseID:FBgn0260749 Length:1136 Species:Drosophila melanogaster


Alignment Length:1042 Identity:191/1042 - (18%)
Similarity:320/1042 - (30%) Gaps:356/1042 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly  1400 AVKQKAEKGKRNATAGGGATALASPPAAPTPA-NPKRTPVYNQKNAKA-------------QQQQ 1450
            |.:...||.:.||........|......||.| ......|...|:.||             |.:.
  Fly   328 AYRNSVEKSEGNADTWCSIGVLYQQQNQPTDALQAYICAVQLDKDHKAAWTNLGILYESCGQLRD 392

  Fly  1451 A------ETKPASNPPSGAGTKRESVYAFGKDDESGSKSGNRRRT----DPSPVPAPALVPNALS 1505
            |      .||..|...|....|:::: ...||....||..::|.|    ..|..|.|::      
  Fly   393 AYACYLNATKQISFQKSSLIRKKQAI-RMKKDTIGLSKGLSQRITFLEGQLSQAPLPSI------ 450

  Fly  1506 ERSPTKKRAAAAAAATAVQLTLSPTENCKIEGKPSKAPTGRGAKKQQQ-QAPAPPAPPVEASGDS 1569
                |.||....:...|..|.:|...|.:.:......|  |...||.. |.|.||.|..:.|...
  Fly   451 ----TSKRRQLCSIEEAWNLPISLEMNSRQQQTAQMLP--RQVTKQSPVQGPPPPYPHSQLSQSP 509

  Fly  1570 DAEGATFYIPLQGAGVGGSGDGGIQGVAVKLGREGPDGPNQKVVMQATLVTKAQ---------MD 1625
                    ||.:                    |...||.:|:.|.|....|.||         ..
  Fly   510 --------IPSK--------------------RIKEDGTSQQEVTQNNSQTSAQNLINISESLNQ 546

  Fly  1626 TNSKPLPESLNTNE-LVKTLLHAASNDAASTTTSLKSLPKASTSAAAGAAAAPGASSLVRVNSNS 1689
            .|...:|||..::| .|.......|||......|:| |.:.|..|.:.           ..:|..
  Fly   547 RNFNAMPESNKSSEQSVLDTFDDISNDIYKQNESIK-LERLSQDALSN-----------NEDSRH 599

  Fly  1690 SLFSGSAKSRTAAQTSSTAAAVAKKYKDDTPIKMANNTAFPRHDDPTQMVEA----PIFRPTEKE 1750
            ....|                      |:..|    :|.|....|..|::.|    ||..|    
  Fly   600 DFIGG----------------------DNADI----STTFKIQMDSKQLMVAVKLLPIDEP---- 634

  Fly  1751 FADPIEFIERITPIAARFGICKII----PPASFKPEC----RISDEMRFTAYNQYVHKMLHRWGP 1807
               |:.              |.|:    ||.| .|:|    ...|::.....:.::....|.:.|
  Fly   635 ---PVH--------------CTILQVNAPPPS-PPDCPPQKLTRDQLLPPTPSVHLENKKHAFSP 681

  Fly  1808 SAKELSAIKKYLATQSIVMNHPPWI-----GGMEVDLPRLYHTVQELGGLKEVIE---------- 1857
            ..:|            ..:.||..:     |.:::|| .|:.|       |.::|          
  Fly   682 QLQE------------FCLKHPIAVVRGLAGVLKLDL-GLFST-------KTLVEANPDHSVEVR 726

  Fly  1858 ----------------KKKWARVA--EEMCIPKLAQDRVTKLDDIYCKYLLPYDTLSPAERQKLF 1904
                            |:.||.::  ....|.|.||.:.:...| ..|.:||.|           
  Fly   727 TQVHQSPDENWDTSQGKRVWACISHRSHTTIAKYAQYQASSFQD-SLKLILPQD----------- 779

  Fly  1905 DEVEADWAKREARARRNADRFVNTESVSNEEDDLSSDEDEESEEEIDGVSMECIVKGRSMPLSQF 1969
               |:|.....::|..::|   :.:||||....|     :..:.:|:               |:.
  Fly   780 ---ESDKGFPGSQAMSDSD---SKDSVSNSNIVL-----KRKKHKIN---------------SKM 818

  Fly  1970 YRIARNTMALWFKSTDPTVNEVE-----------AEFWRHVAVRDSHVCVHSGSIDSSGWGYGFP 2023
            .|...|......|...|.:.|::           |....||    .||.:...::.     ....
  Fly   819 LRFGTNVDLSDEKKWKPQLTELQKLPAFARVISAANMLSHV----GHVILGMNTVQ-----LYMK 874

  Fly  2024 SPGPKGKGSNYARHPWNLKVLTNNSGSVLRSLGPVMGVTVPTLHVGMLFSACCWYRDP------- 2081
            .||.:..|     |..|     ||..|:..::||               ..|.|:..|       
  Fly   875 VPGSRTPG-----HQEN-----NNFCSININIGP---------------GDCEWFAVPDAYWGGV 914

  Fly  2082 HGL---SWIEYLHTGASKLWYGIPDDQSANFRAALTSLIPTHCQNKTIWLPCDTVMVPPHMLTDR 2143
            |.|   :.|.|||..    |:.:.:|                                   |...
  Fly   915 HNLCEKNNISYLHGS----WWPVLED-----------------------------------LYKE 940

  Fly  2144 GVSLCRIEQKPGEFIVVFPRA--YTSSLATGYVVSESVYFATMSWLDLAKDDFRDIHESCEPAMF 2206
            .:.:.|..||||:.:.|....  :..|:.....::.:|...|.....||.:.:.........::.
  Fly   941 NIPVYRFIQKPGDLVWVNAGCVHWVQSIGWCNNIAWNVGPLTARQYSLAIERYEWNKVQAFKSIV 1005

  Fly  2207 SLEQLLFALGYDQRVNSEALHQMLPM-LNDVCEKESAAREQLRAAGVTSTEKVQAEKGQKAKKQQ 2270
            .:..|.:.|..:.:|:...|.:::.| |....:.....:|.:::.|      |:.....:.|.: 
  Fly  1006 PMVHLSWNLARNIKVSDTKLFELIKMCLLQTLKNVLHIQEYVKSKG------VEIRFNGRGKNE- 1063

  Fly  2271 QPPYKSIESECDLCRANLY-ISMVRTEDGN--IYCLQHALKNLNNGNIQAKQCKLIYAYNVDDIQ 2332
                  ....|..|...:: :..::.::..  ::||..|||  .:.::|...|  :..|.:.::|
  Fly  1064 ------ASHYCGQCEVEVFNVLFIKEQEKRHVVHCLSCALK--LSPSLQGIVC--LEEYRLSELQ 1118

  Fly  2333 QL 2334
            ::
  Fly  1119 RV 1120

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Jarid2NP_648324.1 JmjN 1740..1781 CDD:128818 10/48 (21%)
ARID 1812..1893 CDD:279697 20/113 (18%)
JmjC 2066..2181 CDD:202224 20/126 (16%)
zf-C5HC2 2281..2334 CDD:280996 11/55 (20%)
UtxNP_609368.3 TPR repeat 147..181 CDD:276809
TPR_11 156..216 CDD:290150
TPR repeat 186..216 CDD:276809
TPR repeat 228..255 CDD:276809
TPR_11 264..337 CDD:290150 3/8 (38%)
TPR repeat 265..300 CDD:276809
TPR repeat 307..334 CDD:276809 1/5 (20%)
TPR_11 339..402 CDD:290150 12/62 (19%)
TPR repeat 339..369 CDD:276809 7/29 (24%)
TPR_1 340..373 CDD:278916 7/32 (22%)
TPR repeat 374..402 CDD:276809 4/27 (15%)
JmjC 870..978 CDD:202224 29/176 (16%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0055
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.900

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