DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Jarid2 and lid2

DIOPT Version :9

Sequence 1:NP_648324.1 Gene:Jarid2 / 39103 FlyBaseID:FBgn0036004 Length:2351 Species:Drosophila melanogaster
Sequence 2:NP_596174.1 Gene:lid2 / 2541299 PomBaseID:SPBP19A11.06 Length:1513 Species:Schizosaccharomyces pombe


Alignment Length:770 Identity:156/770 - (20%)
Similarity:272/770 - (35%) Gaps:217/770 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly  1722 KMANNTAFP------RHDDPTQMVEAPIFRPTEKEF---------------ADPIEFIERITPIA 1765
            |:.:|.:.|      .|:|..       :|.:.:.|               .||.:|:.......
pombe    23 KLGDNFSLPYLKFDCDHNDKN-------YRASNRPFGLSTGLSVQLNASNMTDPFKFLLDNWHTI 80

  Fly  1766 ARFGICKIIPPASFK-PECRISDEMRFTAYNQYVHKMLHRWGPSAKELSAIKKYLATQSIVMNHP 1829
            .:.|..|::||..:: |.........|.:..|.::|....:..:......:|.:..::.:...||
pombe    81 FKNGAIKLLPPEGWQIPVVLDQGAFEFQSKRQCLNKGCLNYEKNYDYFKKLKAFHESRGLYFYHP 145

  Fly  1830 PWIGGMEVDLPRLYHTVQELGG---------LKEVI-----EKKKWARVAEEMCIPKLAQDRVTK 1880
            |.||...||..||.:.:.:...         |.:||     |..|..|.....|           
pombe   146 PIIGNRPVDFLRLRNAISKFTNSGSSLNNEILHKVIIYLRLEDTKEVRQVLTRC----------- 199

  Fly  1881 LDDIYCKYLLPYD-TLSPAERQKLFDEVEADWAKREARARRNADRFVNTESVSNEEDDL--SSDE 1942
                |.:|:.|:: ..||:.:.|              |:..:..:..||.|.:.:|..:  :|.:
pombe   200 ----YDRYIKPFERDSSPSFKSK--------------RSESSTRKIRNTRSSAQQESPIPETSAQ 246

  Fly  1943 DEESEEEIDG---VSMECIVKGR----------------------------------SMPLSQFY 1970
            ......:::|   :....|.:|.                                  |:|...:|
pombe   247 SPVQTIQVNGSTSLKRPLIERGEQCEYCGLDKNPETILLCDGCEAAYHTSCLDPPLTSIPKEDWY 311

  Fly  1971 RIA----------------------------------RNTMALWFKSTDPTVNEVEAEFWRHVAV 2001
            ..|                                  ||:.:   |.|:.|.:::|..:|..:|.
pombe   312 CDACKFNISDYDPRKGFKWKLSSLKERSAEIFNTLGERNSSS---KLTNLTEDDIELFYWSSLAE 373

  Fly  2002 RDSHVC---------VHSGSIDSSGWGYGFPSPG--PKGKGSNYARHPWNL-------KVLTNNS 2048
            .:|...         .::.:|.||     .||..  |..|   |:..||||       ..|.|.|
pombe   374 SNSGFAPLELEGLSQAYTSTIQSS-----LPSKEVFPLEK---YSSEPWNLHNLPFENPCLFNYS 430

  Fly  2049 GSVLRSLGPVMGVTVPTLHVGMLFSACCWYRDPHGLSWIEYLHTGASKLWYGIPDDQSANFRAAL 2113
            .|.|.||      |:..|.:||:|....|.:.......:.:...|.:..||.:|.|:|..|...|
pombe   431 FSDLSSL------TITRLSIGMVFYTHGWTKSSLSTGLLHHHRFGDTVTWYVLPPDESDAFERYL 489

  Fly  2114 TSLIPTHCQ---NKTIWLPCDTVMVPPHMLTDRGVSLCRIEQKPGEFIVVFPRAYTSSLATGYVV 2175
            .|..|.:..   |::..||   |:|.|..|.:.|.....|:.:|.||:||.|.:|......|:..
pombe   490 ISSYPQYTMEDLNRSNGLP---VIVSPSSLIENGFHPIAIDLRPNEFLVVSPNSYHMGFHQGFSS 551

  Fly  2176 SESVYFATMSWL--DLAKDDFRDIHESCEPAMFSLEQLLFA--LGYDQRVNSEALHQMLPMLNDV 2236
            .|||.|||::|:  .|.......:.....|:..|.|.::.:  |..:...:||.|   :....|:
pombe   552 FESVNFATVNWIKDGLLNSSISVLKSMRIPSSVSYEAVIISMVLSKNPCFSSEWL---IKCFEDM 613

  Fly  2237 CEKESAAREQLRAAGVTSTEKVQAEKGQKAKKQQQPPYKSIESECDLCRANLYISMVRT-EDGNI 2300
            ...|||::.::    :.....:||     .|.:...|   :|..|..|:...::|.::. |....
pombe   614 IANESASKNEI----MKLVPNIQA-----LKLESSVP---LEIRCSNCKQPCFLSFMQCHEPKKF 666

  Fly  2301 YCLQHALKNLNNGNIQAKQCKLIYAYNVDDIQ-------QLIRQLQEKINHKAAV 2348
            .||...:|.:   ::.|....|.|.::|.::.       .|||..:|..|...:|
pombe   667 ICLGDCVKEV---SLNATSWMLFYRWDVHELSNLAERFVSLIRGPEEWTNRLRSV 718

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Jarid2NP_648324.1 JmjN 1740..1781 CDD:128818 9/56 (16%)
ARID 1812..1893 CDD:279697 20/94 (21%)
JmjC 2066..2181 CDD:202224 35/117 (30%)
zf-C5HC2 2281..2334 CDD:280996 11/60 (18%)
lid2NP_596174.1 ARID 122..208 CDD:198082 20/100 (20%)
PHD1_Lid2p_like 270..315 CDD:276994 3/44 (7%)
cupin_like 441..557 CDD:304367 35/118 (30%)
zf-C5HC2 646..697 CDD:280996 11/53 (21%)
PLU-1 710..1047 CDD:285609 3/9 (33%)
PHD_Ecm5p_Lid2p_like 1098..1142 CDD:276993
PHD3_Lid2p_like 1354..1400 CDD:276995
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0055
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10694
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.910

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