DRSC/TRiP Functional Genomics Resources

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Protein Alignment Jarid2 and Kdm5d

DIOPT Version :10

Sequence 1:NP_648324.1 Gene:Jarid2 / 39103 FlyBaseID:FBgn0036004 Length:2351 Species:Drosophila melanogaster
Sequence 2:NP_035549.1 Gene:Kdm5d / 20592 MGIID:99780 Length:1548 Species:Mus musculus


Alignment Length:799 Identity:187/799 - (23%)
Similarity:305/799 - (38%) Gaps:227/799 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly  1730 PRHDDPTQMVEAPIFRPTEKEFADPIEFIERITPIAARFGICKIIPPASFKPECRIS-DEMRFTA 1793
            |..||.....|.|:|.|:..||.||:.:|.:|.|||.:.|||||.|||.::|...:. |..|||.
Mouse     3 PGSDDFLPPPECPVFEPSWAEFRDPLGYIAKIRPIAEKSGICKIRPPADWQPPFAVEVDNFRFTP 67

  Fly  1794 YNQYVHKMLHRWGPSAKELSAIKKYLATQSIVMNHPPWIGGME---VDLPRLYHTVQELGGLKEV 1855
            ..|.::::..:.......|..|.|:...|...:..|    .:|   :||..|...|.|.||.:.:
Mouse    68 RIQRLNELEAQTRVKLNYLDQIAKFWEIQGSSLKIP----NVERKILDLYSLNKIVMEEGGYEAI 128

  Fly  1856 IEKKKWARVAEEMCIPKLAQDRVTKLDDIYCKYLLPY--------------DTLSPAERQKLF-- 1904
            .:.::|||||:.:..|. .::..:.|...|.:.:.||              |.....||.|.:  
Mouse   129 CKDRRWARVAQRLNYPS-GKNIGSLLRSHYERIIYPYEIFQSGANLVQCNTDPFDSEERDKEYKP 192

  Fly  1905 --------------------------------DEVEADWAKREARARRNADRFVNTESVSNEEDD 1937
                                            :::|.:...::.:......:.:.....:.|:..
Mouse   193 HSIPLRQSVQPSKFSCYSRRGKRLQPEPEPTEEDIEKNPELKKLQIYGAGPKMIGLGLKAKEKTL 257

  Fly  1938 LSSDEDEESEEEI---------------------------------------------------- 1950
            ...|..:..:||:                                                    
Mouse   258 RKKDSKQPDKEEVTCPATIVVKGEASEFGKVTSAFSDKNLNHSFEPCMKMTMQLRNNHSSTQFMN 322

  Fly  1951 -------------------DGVS----MECIV-------KG------------RSMP-------- 1965
                               ||.|    :.|::       ||            :|.|        
Mouse   323 SYVCRICSRGDEVDKFLLCDGCSDNYHIFCLLPPLSEVPKGVWRCPKCILAECKSPPEAFGFEQA 387

  Fly  1966 -----LSQFYRIARNTMALWFK---STDPTVNEVEAEFWRHVAVRDSHVCVHSGS-IDSSGWGYG 2021
                 |..|..:|.:..|.:|.   ...|| ..||.||||.|:..:..|.|..|: |.|..:|.|
Mouse   388 TQEYTLQSFGEMADSFKADYFNMPVHMVPT-EVVEKEFWRLVSSIEEDVTVEYGADIHSKEFGSG 451

  Fly  2022 FP--------SPGPKGKGSNYARHPWNLKVLTNNSGSVLRSL-GPVMGVTVPTLHVGMLFSACCW 2077
            ||        ||..|    .||...|||.|:.....|||..: ..:.|:.||.|:|||:|||.||
Mouse   452 FPVNNSKWDLSPEEK----EYAACGWNLNVMPVLDQSVLCHINADISGMKVPWLYVGMVFSAFCW 512

  Fly  2078 YRDPHGLSWIEYLHTGASKLWYGIPDDQSANFRAALTSLIPTHCQNKTIWLPCDTVMVPPHMLTD 2142
            :.:.|....|.|||.|..|.|||:|...:.:....:..|.|....::...|.....::.|:.|..
Mouse   513 HIEDHWSYSINYLHWGEPKTWYGVPSLAAEHLEDVMKRLTPELFDSQPDLLHQLVTLMNPNTLMS 577

  Fly  2143 RGVSLCRIEQKPGEFIVVFPRAYTSSLATGYVVSESVYFATMSWLDLAK---DDFRDIHESCEPA 2204
            .||.:.|..|..|||::.|||||.|....||..:|:|.|.|..||.:.:   :.:|.:...|   
Mouse   578 HGVPVVRTNQCAGEFVITFPRAYHSGFNQGYNFAEAVNFCTADWLPVGRQCIEHYRRLRRYC--- 639

  Fly  2205 MFSLEQLLFAL-GYDQRVN---SEALH-QMLPMLNDVCEKESAAREQLRAAGVTSTEKVQAEKGQ 2264
            :||.|:|:..: .:.::::   :.|:| :|..|:    ::|...|:.|...|:|..|:...|.  
Mouse   640 VFSHEELICKMAAFPEKLDLNLAVAVHKEMFIMV----QEERRLRKTLLEKGITEAEREAFEL-- 698

  Fly  2265 KAKKQQQPPYKSIESECDLCRANLYISMVRTED--GNIYCLQHALKNLNNGNIQAKQCK------ 2321
                     ....|.:|..|:...::|.:...|  .::.||.|    :|:      .||      
Mouse   699 ---------LPDDERQCIKCKTTCFLSALACYDCPDSLVCLSH----IND------LCKCSRNRQ 744

  Fly  2322 -LIYAYNVDDIQQLIRQLQ 2339
             |.|.|.:|::..::::|:
Mouse   745 YLRYRYTLDELPAMLQKLK 763

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Jarid2NP_648324.1 PHA03247 <157..429 CDD:223021
Atrophin-1 762..>986 CDD:460830
JmjN 1740..1781 CDD:128818 21/40 (53%)
ARID_JARD2 1804..1915 CDD:350634 28/161 (17%)
cupin_RmlC-like 2066..2181 CDD:477354 42/114 (37%)
zf-C5HC2 2281..2334 CDD:460750 14/61 (23%)
Kdm5dNP_035549.1 JmjN 13..54 CDD:128818 21/40 (53%)
ARID_KDM5C_5D 79..170 CDD:350639 23/95 (24%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 208..229 0/20 (0%)
PHD1_KDM5C_5D 325..370 CDD:277077 6/44 (14%)
JmjC 500..616 CDD:396791 42/115 (37%)
zf-C5HC2 706..758 CDD:460750 14/61 (23%)
PLU-1 771..1096 CDD:462475
PHD_SF 1182..1242 CDD:473978
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1438..1468
Blue background indicates that the domain is not in the aligned region.

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