DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Jarid2 and jmjd-3.3

DIOPT Version :9

Sequence 1:NP_648324.1 Gene:Jarid2 / 39103 FlyBaseID:FBgn0036004 Length:2351 Species:Drosophila melanogaster
Sequence 2:NP_001309680.1 Gene:jmjd-3.3 / 181467 WormBaseID:WBGene00007813 Length:753 Species:Caenorhabditis elegans


Alignment Length:863 Identity:155/863 - (17%)
Similarity:275/863 - (31%) Gaps:272/863 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly  1558 PPAPPVEASGDSDAEGATFYIPLQGAGVGGSGDGGIQGVAVKLGREGPDGPNQKVVMQATLVTKA 1622
            |.:|..:....:| |.:||.||        ..:.....|.|.:.....:.||....:       |
 Worm    56 PDSPSRKRKAPND-ESSTFKIP--------KTEDPANNVEVDMKLASSESPNSNFYV-------A 104

  Fly  1623 Q-MDTNSKPLPESLNTNELVKTLLHAASNDAASTTTSLKSLPKASTSAAAGAAAAPGASSLVRVN 1686
            | |..|...|||:.|....:|.|....|.|....:.:|..|..........:.......:||...
 Worm   105 QCMAHNIHLLPENTNKETKLKILEFIKSEDEVDCSMNLVPLSSNRPDYMLTSGVRQILKNLVSAV 169

  Fly  1687 SNSSLFSGSAKSRTAAQTSS-------TAAAVAKKYKDDTPIKMANNTAF--PRHDDPTQMVEAP 1742
            .||.  |.:.:.|.:...|:       :...:.|:..:.||:.:.....|  |.....|::|:..
 Worm   170 ENSK--SKNTRGRKSKIQSNLTPINEKSECKIIKRKNEKTPLLLLTVPMFLDPLTTSGTEIVKKA 232

  Fly  1743 I-----------------------------------FRPTEKEFADPIEFIER----ITPIAARF 1768
            .                                   |.|..|:  .|.:..:|    :..:...|
 Worm   233 SEWLTTGRNNVYNDKKFAFQKNTKSAVRSNFFQKKGFEPLAKQ--KPKQSAQRAQVEVFQVEPGF 295

  Fly  1769 GICKIIPPASFKPECRI-----SDEMRFTAYNQYVHKMLHRWGPSAKELSAIKKYLATQSIVMNH 1828
            .:..:....:..|.|.|     :..|.|:.::  :..:....|....::...:...:|::|.:.|
 Worm   296 DLTNLETLVTSSPICIIRGLGQAVYMDFSLFD--LQNVAGLDGEQVIDVRRQRSQHSTKNIKLAH 358

  Fly  1829 PPWIGGMEV------DLPRLY--HTVQELGGLKEVIEKKKWARVAEEMCIPKLAQDR-------- 1877
            .. .|.:|.      |..|:.  .|:.|.....:::||..|      .|:...|...        
 Worm   359 TS-KGSLEAAERKWNDEERIVEKRTLAEYAVNYDMMEKIGW------KCVEHAAYKNNFENQAGF 416

  Fly  1878 VTKLDDIYCKYLLPYDTLSP-AERQKLFDEVEADWAKREARARRNADRFVNTESVSNEEDDLSSD 1941
            |.:..|.|.||.||   ||| |...:|:|                     .|..:::...::...
 Worm   417 VQEAVDAYMKYQLP---LSPTAVNGELYD---------------------RTYPLTSFATNVDLK 457

  Fly  1942 EDEESE---EEIDGVSMECIVKGRSMPLSQFYRIARNTMALWFKSTDPTVNEVEAEFWRHVAVRD 2003
            |:::.:   :|:|             .|..|.: .:..:..:.|.:...||||:..|        
 Worm   458 EEQKFQPLIQELD-------------KLPNFLK-TKGGLNEYIKESIGGVNEVQMYF-------- 500

  Fly  2004 SHVCVHSGSIDSSGWGYGFPSPGPKGKGSNYARHPWNLKVLTNNSGSVLRSLGPVMGVTVPTLHV 2068
                                    |..||....|..|..:     ||:..:|||           
 Worm   501 ------------------------KQPGSRTTCHIENQAI-----GSLNLNLGP----------- 525

  Fly  2069 GMLFSACCWYRDPHGLSWIEYLHTGASKLWYGIPDDQSANFRAALTSLIPTHCQNKTIWLPCDTV 2133
                ..|                     :||.:..:.||.|...|        ..|.:| |.|:|
 Worm   526 ----GKC---------------------IWYAVASEHSAKFEQLL--------MKKNLW-PYDSV 556

  Fly  2134 MVP-PHMLTDRGVSLCRIEQKPGEFIVVFPRAYTSSLATG-YVVSESVYF-ATMSWLDLAKDDFR 2195
            :.| ...|.:.|:.:.:..|:..:.:.|         .|| |...:|:.| ..:|| ::|:..| 
 Worm   557 LWPNEEELLNWGIPVMKFIQETDDTVYV---------GTGTYHWVQSIGFTGNVSW-NIAESTF- 610

  Fly  2196 DIHESCEPAMFSLEQLLFALGYDQRVNSEALHQMLPMLNDVCEKESAAREQLRAAGVTSTEKVQA 2260
                    ..|::..|:.....:|..:|     :||::       ..|.|..:......||    
 Worm   611 --------DQFAMAALVHDHNTEQSYDS-----VLPII-------PMAWEMAKKRAFLGTE---- 651

  Fly  2261 EKGQKAKKQQQPPYKSIESECDLCRANLYISMVRTEDGNIYCLQHALKNLNN-GNIQAKQCKLIY 2324
                     ..|..|||.:. .|.::...:...::....|..::.|...|:: ...|.|:||...
 Worm   652 ---------MYPLIKSILAR-SLAKSTFELDKAKSAGAKISNIEDASVELSHVERCQGKKCKRDV 706

  Fly  2325 AYNVDDIQQLIRQLQEKI 2342
            .:|...|:|..|...||:
 Worm   707 LFNTVVIKQNSRNKTEKL 724

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Jarid2NP_648324.1 JmjN 1740..1781 CDD:128818 6/79 (8%)
ARID 1812..1893 CDD:279697 21/96 (22%)
JmjC 2066..2181 CDD:202224 21/116 (18%)
zf-C5HC2 2281..2334 CDD:280996 10/53 (19%)
jmjd-3.3NP_001309680.1 JmjC 497..604 CDD:334913 35/198 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0055
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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