DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Jarid2 and rbr-2

DIOPT Version :9

Sequence 1:NP_648324.1 Gene:Jarid2 / 39103 FlyBaseID:FBgn0036004 Length:2351 Species:Drosophila melanogaster
Sequence 2:NP_502032.2 Gene:rbr-2 / 177985 WormBaseID:WBGene00004319 Length:1477 Species:Caenorhabditis elegans


Alignment Length:805 Identity:200/805 - (24%)
Similarity:317/805 - (39%) Gaps:191/805 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly  1697 KSRTAAQTSSTAAAVAKKYKDDTPIKMAN--NTAFPRHDDPTQMVE-----------APIFRPTE 1748
            ::|....:.||.:|.:   ...:|.|.|:  |:....|....:|.:           |||:.|||
 Worm     2 RARRQENSISTPSAPS---TSTSPRKKASIGNSRSKNHGSKMEMYDQFYKKFVRPPMAPIYYPTE 63

  Fly  1749 KEFADPIEFIERITPIAARFGICKIIPPASFKPECRISDEMRFTAYNQYVHKMLHRWGPSAKELS 1813
            :||:||||::.:|...|.:||:.||:|||:|||...| |:..|| :.....|:        .|:.
 Worm    64 EEFSDPIEYVAKIRHEAEKFGVVKIVPPANFKPPFAI-DKEAFT-FRPRTQKL--------NEVE 118

  Fly  1814 AIKKYLAT-----------QSIVMNHPPWIGGMEVDLPRLYHTVQELGGLKEVIEKKKWARVAEE 1867
            ||.|...|           ..:....|....|..|||.||:..||..||.:||.|.:||..||.|
 Worm   119 AIVKEKHTFIDRLINFNRYSGLTFEFPVDRDGNIVDLYRLHRIVQNFGGCEEVNEDEKWRDVARE 183

  Fly  1868 MCIPK--LA--------------------------QDRVTKLDD--------IYCKYLLPYDTLS 1896
            . :||  :|                          :::..|.||        :..||...:.|:.
 Worm   184 Y-LPKEQMARGVPSAFINLIRSHYNLHIEPFNRNLKEKAMKNDDESDDEMEELKHKYQHHHGTMR 247

  Fly  1897 -----PAERQKLFDEVEADWAKREARAR------RNADRFVNTESVSNE----------EDDLSS 1940
                 |.::.....|.|...:.:..|.|      .::.:.:.|.|..|.          |.|...
 Worm   248 TEIEVPNDKTTEGGEDECPVSMQSGRRRSKNKKASSSRKTLGTSSKKNSTRGRKNKKKAEGDDDD 312

  Fly  1941 DED----------EESEEE-------IDGVS----------------------MECIVK------ 1960
            |||          .|.::|       |||.:                      .:||..      
 Worm   313 DEDPMDQVFCVACNEGKDEDLLLLCDIDGCNNGRHTYCCDPVLDEVPEGEWRCPKCIESEDAKIG 377

  Fly  1961 --------GRSMPLSQFYRIARNTMALWFKSTD---PTVNEVEAEFWRHVAVRDSHVCVHSGS-I 2013
                    .....|:.|...|......:|...|   .:.:.||..||::|...::.|.|..|: :
 Worm   378 LDWGFYDADTEYNLNSFTEFANKWKCDYFGVKDVSQVSCDAVERSFWKNVISHENPVSVKYGADL 442

  Fly  2014 DSSGWGYGFPSPGPKGKG------SNYARHPWNLKVLTNNSGSVLRSLGP-VMGVTVPTLHVGML 2071
            .:|..|.|||....|..|      ..||.|.|||..:.....|||..... :.|:.||.::|||.
 Worm   443 ITSRVGSGFPRKEDKHTGPDLKLKQQYASHAWNLNNMPVLRESVLSHFNTGISGMMVPWVYVGMC 507

  Fly  2072 FSACCWYRDPHGLSWIEYLHTGASKLWYGIPDDQSANFRAALTSLIPTHCQNKTIWLPCDTVMVP 2136
            ||..||:.:.|....:.|.|.|..|:|||:..:.:..|..||..:.|.....:.......|....
 Worm   508 FSTFCWHTEDHWTYSVNYNHFGERKIWYGVGGEDAEKFEDALKKIAPGLTGRQRDLFHHMTTAAN 572

  Fly  2137 PHMLTDRGVSLCRIEQKPGEFIVVFPRAYTSSLATGYVVSESVYFATMSWLDLAKDDFRDIHESC 2201
            ||:|...||.:..:.|..|||::.|||||.:....|...:|:|.||.:.||...::.........
 Worm   573 PHLLRSLGVPIHSVHQNAGEFVITFPRAYHAGFNEGLNFAEAVNFAPIDWLSKGRECVESYSNVR 637

  Fly  2202 EPAMFSLEQLLF-------ALGYDQRVNSEALHQMLPMLNDVCEKESAAREQLRAAGVTSTEKVQ 2259
            ...:||.::|||       .||...   |.|.|:.|..   :.||:...||.|...||::     
 Worm   638 RYLVFSHDELLFKMVEAMDKLGISM---SLATHEELIR---IYEKQKMLRELLARLGVSN----- 691

  Fly  2260 AEKGQKAKKQQQPPYKSIESE---CDLCRANLYI-SMVRTEDGNIYCLQHALKNLNNGNIQAKQC 2320
                   ::.||..::.|..|   |..|:..|:: ::|..:...:.|::|. .:|.| :...|..
 Worm   692 -------RQMQQVMFEKIPDEQRSCRFCKTTLFMCALVCNKHKKMTCVEHH-DHLCN-SCTTKDY 747

  Fly  2321 KLIYAYNVDDIQQLIRQLQEK-INH 2344
            :..|.:.:|.:..:..:|.:: :|:
 Worm   748 RYQYRFELDQLNNMCDELGKRTVNY 772

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Jarid2NP_648324.1 JmjN 1740..1781 CDD:128818 22/51 (43%)
ARID 1812..1893 CDD:279697 31/127 (24%)
JmjC 2066..2181 CDD:202224 37/114 (32%)
zf-C5HC2 2281..2334 CDD:280996 11/53 (21%)
rbr-2NP_502032.2 JmjN 55..96 CDD:128818 22/40 (55%)
BRIGHT 122..214 CDD:128777 24/92 (26%)
PHD_SF 321..368 CDD:304600 5/46 (11%)
JmjC 501..617 CDD:202224 37/115 (32%)
zf-C5HC2 709..761 CDD:280996 11/53 (21%)
PLU-1 788..1130 CDD:285609
PHD 1208..1254 CDD:214584
PHD3_KDM5A_like 1413..1463 CDD:277083
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 46 1.000 Domainoid score I8226
eggNOG 1 0.900 - - E1_COG0055
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D664180at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10694
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
65.920

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