DRSC/TRiP Functional Genomics Resources

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Protein Alignment Jarid2 and kdm5a

DIOPT Version :9

Sequence 1:NP_648324.1 Gene:Jarid2 / 39103 FlyBaseID:FBgn0036004 Length:2351 Species:Drosophila melanogaster
Sequence 2:XP_031754497.1 Gene:kdm5a / 100492348 XenbaseID:XB-GENE-996070 Length:1686 Species:Xenopus tropicalis


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Jarid2NP_648324.1 JmjN 1740..1781 CDD:128818
ARID 1812..1893 CDD:279697
JmjC 2066..2181 CDD:202224
zf-C5HC2 2281..2334 CDD:280996
kdm5aXP_031754497.1 JmjN 12..53 CDD:128818
ARID_KDM5A 78..169 CDD:350637
PHD1_KDM5A 288..336 CDD:277075
JmjC 463..579 CDD:396791
zf-C5HC2 669..721 CDD:397190
PLU-1 734..1064 CDD:400641
PHD2_KDM5A 1154..1206 CDD:277079
PHD3_KDM5A 1599..1650 CDD:277156
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D664180at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR10694
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
22.110

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