DRSC/TRiP Functional Genomics Resources

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Protein Alignment Jarid2 and jarid2a

DIOPT Version :9

Sequence 1:NP_648324.1 Gene:Jarid2 / 39103 FlyBaseID:FBgn0036004 Length:2351 Species:Drosophila melanogaster
Sequence 2:XP_001345885.4 Gene:jarid2a / 100007426 ZFINID:ZDB-GENE-061218-1 Length:1171 Species:Danio rerio


Alignment Length:1189 Identity:329/1189 - (27%)
Similarity:535/1189 - (44%) Gaps:236/1189 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly  1263 KELSASFSSSSKNTRGDLGKSESAWSAKGP-SLKATPVLV------TPPNRKELHEQADSKDCDA 1320
            ||.:..||......:....:::..::...| |..|||:.|      ||........:...|..|.
Zfish    90 KERNHEFSMDGPARKKPRLQAQRKFAQSHPCSPNATPLKVLDALSPTPAALLNHLTRRKPKTEDF 154

  Fly  1321 LDY----DKSSTPVNLTQKITSNESLAVEKKVNDRKGKESAKAAASKAATQPRSTAATPPTPISS 1381
            |.:    ..|:.|.|:|...::.:...|:::.::.:.:|||                      |.
Zfish   155 LTFLCLRGSSALPSNMTYFGSAKDDEDVDEEEDEEEEEESA----------------------SH 197

  Fly  1382 TPTPASLTPSKSSPTPPPAVKQKAEKGKRNATAGG----GATALASPPAAPTPANPK----RTPV 1438
            .|.....||.||             ||.....|.|    |.|..|....:...|..|    :.||
Zfish   198 APASCQSTPRKS-------------KGPNKCIANGHVFNGQTRAAEVRESSLRARGKDGKEKHPV 249

  Fly  1439 --------YNQKNAKAQQQQAETKPASNPPSGAGTKRESVYAFGKDDESGSKSGNRRRTDPS-PV 1494
                    :|.:..:|.|:|.:.....|..|||..             ..|:.....||.|: .|
Zfish   250 ASARSSTTHNLRPNRAVQEQKQQASKMNGTSGASA-------------VSSRKTRELRTPPTKAV 301

  Fly  1495 PAP---------ALVPNA---LSERSPTKKRA-----AAAAAATAVQLTLSPTENCKIEGKPSKA 1542
            ..|         .|:..|   ||..:.|..:.     |..:.|...:..|||....::.|..:..
Zfish   302 KYPKGHVTYTKARLLKEAKLSLSTHTHTHSQTSNSGKAQTSHAKMQKQVLSPATAGRLSGTDTFP 366

  Fly  1543 PTGRGAKKQQQQAPAPPAPPVEASGDSDAEGATFYIPLQGAGVGGSGDGGIQGVAVKLGREGPDG 1607
            |...|.::.::|                       :.|.||.|      .::.|.|         
Zfish   367 PRRNGLRQSKRQ-----------------------LELAGAEV------EVKRVKV--------- 393

  Fly  1608 PNQKVVMQATLVTKAQMDTNSKP------LPESLNTNELVKT-LLHAASNDAASTTTSLKSLPKA 1665
               .||...|...||..:|.::|      .|:..:..:|:.| .:|..::..|      |:.|..
Zfish   394 ---HVVPLETRSRKAAQETQARPQPAGSQRPKRASAGKLMFTKQMHCKASVLA------KNSPTT 449

  Fly  1666 STSAAAGAAAAPGASSLVRVNSNSSLFSGSAKSRTAAQTSSTAAAVAKKYKDDTPIKMANNTAFP 1730
            ||......|.:|..|...|  ::::|..|...:.|...:|.             |.:....:|  
Zfish   450 STRDILRPANSPKLSETPR--TSNALKQGHPSNMTEPFSSE-------------PKERGRRSA-- 497

  Fly  1731 RHDDPTQMVEAPIFRPTEKEFADPIEFIERITPIAARFGICKIIPPASFKPECRISDEMRFTAYN 1795
                  ::.|.|:|.|...||.||:.|:|.....|..||:.:::|||.::|||::.:||||.:|.
Zfish   498 ------EITELPVFYPNTHEFHDPLTFMELARGQAEAFGLFRVVPPAGWRPECKLKEEMRFVSYV 556

  Fly  1796 QYVHKMLHRWGPSAKELSAIKKYLATQSIVMNHPPWIGGMEVDLPRLYHTVQELGGLKEVIEKKK 1860
            |:|||:..||||:.:.|:.|:::|.||.|.|..||.|||.|:||.|.:..:.|:||:::|.:.|.
Zfish   557 QHVHKLGRRWGPNVQRLACIRRHLRTQGINMEEPPLIGGCELDLARFFQIINEMGGMQQVTDLKT 621

  Fly  1861 WARVAEEMCIPKLAQDRVTKLDDIYCKYLLPYDTLSPAERQKLFDEVEADWAKREARARRNAD-- 1923
            |.|:|:.:.||:.||||:.||.:.||:|||.||:|:||:|.:|..||   .|::||..|||..  
Zfish   622 WGRLADLLGIPRSAQDRLAKLQEAYCQYLLSYDSLTPAQRAQLEKEV---LAEKEALERRNGPLE 683

  Fly  1924 ------------------------------------RFVNTESVSNEEDDLSSDEDEE---SEEE 1949
                                                |.::..:.|..:..|....:||   ||:.
Zfish   684 GQGDIAQHAALQLPRCEPKNGLVNGALHRSGAREHLRELDPTAKSTRQKRLEKRGEEEGMISEQH 748

  Fly  1950 IDGVSMECIVKGRSMPLSQFYRIARNTMALWFKSTDPTVNEVEAEFWRHVAVRDSHVCVHSGSID 2014
                  :||.:|:|..|:.|:|.|||||.:.| |.:|...|||.|:||.|..::|||.||.|.:|
Zfish   749 ------KCIYRGKSFSLTTFFRAARNTMNMCF-SKEPDTAEVEKEYWRLVDEKESHVAVHCGRVD 806

  Fly  2015 SSGWGYGFPSPGPKGKGSNYARHPWNLKVLTNNSGSVLRSLGPVMGVTVPTLHVGMLFSACCWYR 2079
            :...|.||    |.||...:::|.|||.||:|||||:||.||.|.|||:|.|::||:||..||.|
Zfish   807 TKTHGSGF----PVGKSEPFSKHGWNLNVLSNNSGSILRHLGAVPGVTIPWLNIGMVFSTSCWCR 867

  Fly  2080 DPHGLSWIEYLHTGASKLWYGIPDDQSANFRAALTSLIPTHCQNKTIWLPC--DTVMVPPHMLTD 2142
            |.:.|.:|:||||||..:||.||.::.:.....:.:|:..   |.|..|..  ..:|:.|.:|..
Zfish   868 DQNSLPYIDYLHTGADCIWYCIPAEEKSKLDKVVHTLLQA---NGTPGLEMLERNIMISPEVLRR 929

  Fly  2143 RGVSLCRIEQKPGEFIVVFPRAYTSSLATGYVVSESVYFATMSWLDLAKDDFRDIHESCEPAMFS 2207
            :||.:.|..|..|:|:|.||..:.:.:..||.|||:::||.:.|:.|..:..:|:........||
Zfish   930 KGVKVYRTVQHSGQFMVCFPGTFVAKVCCGYSVSETMHFANLQWMKLGYEAAKDLKRRRIEEPFS 994

  Fly  2208 LEQLLFALGYDQRVNSEALHQMLPMLNDVCEKESAAREQLRAAGVTSTEK--VQAEKGQKAKKQQ 2270
            .|:||:.:...:|.|.:.:..:..:..|:.:.|...|.:|..||:..:.:  ...|...:.:|||
Zfish   995 TEKLLYQITTCERDNKQLMTAVSSLFRDLRDAEIRQRRELFEAGLRLSARYGTNCESPTERRKQQ 1059

  Fly  2271 QPPY--KSIESECDLCRANLYISMVRTEDGN-IYCLQHALKNLNNGNIQAKQCKLIYAYNVDDIQ 2332
            :..:  .:.:..|.:|:...|:|||..|..| ::||:.||:.:.... ..:..|:::.|:.:.:.
Zfish  1060 RSRFTEDTADRRCQVCQHLCYLSMVVHESDNVVFCLECALRYIQKRR-SPRGLKMMFRYSEEQLN 1123

  Fly  2333 QLIRQLQEKINHKAAVKKK 2351
            .|:.::..:...||.||::
Zfish  1124 SLVNRVCGRTLDKAGVKQR 1142

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Jarid2NP_648324.1 JmjN 1740..1781 CDD:128818 16/40 (40%)
ARID 1812..1893 CDD:279697 37/80 (46%)
JmjC 2066..2181 CDD:202224 42/116 (36%)
zf-C5HC2 2281..2334 CDD:280996 14/53 (26%)
jarid2aXP_001345885.4 JmjN 501..542 CDD:301729 16/40 (40%)
ARID 568..654 CDD:198082 38/85 (45%)
JmjC 853..968 CDD:202224 42/117 (36%)
zf-C5HC2 1072..1125 CDD:280996 14/53 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170573984
Domainoid 1 1.000 122 1.000 Domainoid score I5600
eggNOG 1 0.900 - - E1_COG0055
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 465 1.000 Inparanoid score I1517
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D664180at2759
OrthoFinder 1 1.000 - - FOG0007182
OrthoInspector 1 1.000 - - otm24408
orthoMCL 1 0.900 - - OOG6_109452
Panther 1 1.100 - - O PTHR10694
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R6120
SonicParanoid 1 1.000 - - X5293
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.790

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