DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3552 and Gdpgp1

DIOPT Version :10

Sequence 1:NP_648319.1 Gene:CG3552 / 39097 FlyBaseID:FBgn0035999 Length:408 Species:Drosophila melanogaster
Sequence 2:NP_001387168.1 Gene:Gdpgp1 / 308763 RGDID:1560277 Length:385 Species:Rattus norvegicus


Alignment Length:297 Identity:92/297 - (30%)
Similarity:150/297 - (50%) Gaps:18/297 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 NAMKVRWDQLHKVPGLFSYQLEKSPQSRKIPGYWGFYAELNSDRNRKRRRPQTIESLNPTFKHMM 149
            :|:...|.|..:: |||.|:|| ..|::.:||..||.|:||.:|..:|||||.|:|:...|....
  Rat    61 SALCSAWRQRVEL-GLFRYRLE-DLQTQILPGSVGFVAQLNIERGIQRRRPQNIKSVRQEFDPEQ 123

  Fly   150 FNFNKVDAQEVIMTIDDAHGSP------EVQMIINKSPITKYHTLICPEVGKNHTQRITRDALQF 208
            |||||:...||:..:......|      :|.::||.||:...|.|:.|.......||:....|:.
  Rat   124 FNFNKIRPGEVLFRMQREPNGPAAPKQEDVLVVINVSPLEWGHVLLVPTPAHGLPQRLLPGVLRV 188

  Fly   209 CITFMRNIDDKDMRMGYNSPGALASVNHLHFHLLHMPQDLYIDHVPLDEL-AGGYVYRLSRRAPT 272
            .:..:........|:|:||.|.||||||||.|..::...|.::..|...| ..||:: |.:..|.
  Rat   189 GLEAVLLSQHPGFRVGFNSLGGLASVNHLHLHGYYLAHPLPVEGAPSTPLDPKGYIH-LLQALPA 252

  Fly   273 EGICIVFNENDSDEQVAEKVDQLYMLAMWMCKNNMPHNLFLTQDRRPGKSGN------IKVFVFA 331
            .|  .:|..:.....:...:.::.....::..:.:.||||:|:...||::.:      |:|.::|
  Rat   253 PG--FLFYTSGPGPDLEALISRVCQATDYLSDHEIAHNLFVTRGAPPGQASSTSDLSGIRVILWA 315

  Fly   332 RSEYCVNKDLAEFNVGFCELAGYIPLPDADKMENLTE 368
            |......|:...|||..|||||::|:..:....:|||
  Rat   316 RKSSFGIKESGAFNVALCELAGHLPVKTSQDFSSLTE 352

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3552NP_648319.1 PLN03103 <99..368 CDD:215577 87/281 (31%)
Gdpgp1NP_001387168.1 PLN03103 55..385 CDD:215577 92/297 (31%)

Return to query results.
Submit another query.