DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment phol and Gli1

DIOPT Version :10

Sequence 1:NP_648317.1 Gene:phol / 39095 FlyBaseID:FBgn0035997 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_001178839.1 Gene:Gli1 / 140589 RGDID:621673 Length:1109 Species:Rattus norvegicus


Alignment Length:402 Identity:99/402 - (24%)
Similarity:149/402 - (37%) Gaps:78/402 - (19%)


- Green bases have known domain annotations that are detailed below.


  Fly   251 FNVTLWSSLNSEDEDEEEELEEPPGCAGTTSVTSSSAAQNEGSPSMPKLIIDEHMINHDVLSDGI 315
            ||......:||..|         |.|..........:...||...:|..    |..|....|.|.
  Rat     2 FNPMTSPQVNSYGE---------PCCLRPLPSQGVPSMGTEGLSGLPFC----HQANFMSGSQGY 53

  Fly   316 GN--------EYVILPDPFSASAVTDVEEVVNAFMGDVKGEEDSQPLSEQLIYAENQLEEAYGNI 372
            |:        |..:.|.|.|:..:|.            |......|||:..:..:..:..:..::
  Rat    54 GSARETSSCTEGSLFPPPRSSVKLTK------------KRALSISPLSDASLDLQTVIRTSPSSL 106

  Fly   373 ELIENMPNNVELIQTPGPGPATVSVA-----------LSKVNGCVP--NPQPALPKLVLQNSSTN 424
            ....|     ....:||.....:|:.           :|...|..|  ..||.:|....|.|.. 
  Rat   107 VAFIN-----SRCTSPGGSYGHLSIGTMSPSLGFPPQMSHQKGTSPPYGVQPCVPHDSTQGSMM- 165

  Fly   425 VRLKSAGNQSKVTKRQLTAAAQVATPNPPPPLVASSNPARPQRPTIVTKLPTAVANQTAGNAMGA 489
            :..:|.|.::..   ||.:...:         :....|..|....:.:...|:..:...|...|.
  Rat   166 LHPQSRGPRATC---QLKSELDI---------MVGKCPEEPLEGDMSSPNSTSTQDHLLGMLDGR 218

  Fly   490 AGAAGEEDEEP----KFRCTHRGCNKEFRNHSAMRKHM---HTHGPRGH-VCNVCG-----KSFV 541
            .....||..||    :..|...||::||.:...:..|:   |.||.|.. ||:..|     :.|.
  Rat   219 EDLEREEKPEPESVYETDCRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFK 283

  Fly   542 ESSKLKRHQLVHTGEKPFECTFEGCGKRFSLDFNLRTHVRIHTGDRPYHCPIDGCSKCFAQSTNL 606
            ....|..|...||||||.:||||||.|.:|...||:||:|.|||::||.|..:||||.|:.:::.
  Rat   284 AQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEQEGCSKAFSNASDR 348

  Fly   607 KSHM-LTHTKPK 617
            ..|. .||:..|
  Rat   349 AKHQNRTHSNEK 360

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pholNP_648317.1 COG5048 <504..614 CDD:227381 48/119 (40%)
C2H2 Zn finger 504..526 CDD:275368 7/24 (29%)
C2H2 Zn finger 533..553 CDD:275368 5/24 (21%)
C2H2 Zn finger 561..583 CDD:275368 13/21 (62%)
C2H2 Zn finger 591..613 CDD:275368 7/22 (32%)
Gli1NP_001178839.1 COG5236 <196..>433 CDD:227561 57/165 (35%)
FOXP-CC 237..>265 CDD:465036 9/27 (33%)
C2H2 Zn finger 303..325 CDD:275368 13/21 (62%)
C2H2 Zn finger 333..356 CDD:275368 7/22 (32%)
C2H2 Zn finger 364..385 CDD:275368
PHA03247 <561..867 CDD:223021
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.