DRSC/TRiP Functional Genomics Resources

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Protein Alignment phol and Zfp42

DIOPT Version :9

Sequence 1:NP_001287005.1 Gene:phol / 39095 FlyBaseID:FBgn0035997 Length:669 Species:Drosophila melanogaster
Sequence 2:XP_002728454.2 Gene:Zfp42 / 100361947 RGDID:2319133 Length:305 Species:Rattus norvegicus


Alignment Length:356 Identity:122/356 - (34%)
Similarity:162/356 - (45%) Gaps:84/356 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   288 AQNEGSPSMPKLIIDEHMINHDV-------------LSDGIGNEYVILPDPFSASAVTDVEEVV- 338
            |:..|.....:..:|...:|||.             ::..|..|..|.|:        :.|:|. 
  Rat     9 AKTSGQKGPGRRALDRMTLNHDEARPVQNTRVEPPHVTYTIHEEGEISPE--------NEEDVFP 65

  Fly   339 NAFMGDVKGEEDSQP-LSEQLIYAE-NQLEEAYGNIELIENMPNNVELIQTPGPGPATVSVALSK 401
            |.::..:...|.|:| |.|.|::.. ..||||                                 
  Rat    66 NGYLECIIRGEFSEPILEEDLLFKSFESLEEA--------------------------------- 97

  Fly   402 VNGCVPNPQPALPKLVLQNSSTNVRLKSAGNQSKVTKRQLTAAAQVATPNPPPPLVASSNPARPQ 466
                    :..|...||:.||.   |:.....:|..||        ||...|...|.:::.....
  Rat    98 --------EQDLSCQVLEASSL---LEYMTKGTKQEKR--------ATQEEPQQTVGANSVPECS 143

  Fly   467 RPTIVTKLPTAVANQT-AGNAMGAAGAAGEEDEEPKF-------RCTHRGCNKEFRNHSAMRKHM 523
            ......|||....::. .......:|..||:.:...:       .|...||.|:.|:.:|:||||
  Rat   144 EYLTSRKLPVGEPSEVDLSYHEQLSGFTGEKLKGGPYCGNISMLECPQAGCKKKLRDKTALRKHM 208

  Fly   524 HTHGPRGHVCNVCGKSFVESSKLKRHQLVHTGEKPFECTFEGCGKRFSLDFNLRTHVRIHTGDRP 588
            ..||||.|||..|||:|.||||||||.||||||:||:|||||||||||||||||||||||||::.
  Rat   209 LVHGPRQHVCAECGKAFTESSKLKRHFLVHTGERPFQCTFEGCGKRFSLDFNLRTHVRIHTGEKR 273

  Fly   589 YHCPIDGCSKCFAQSTNLKSHMLTHTKPKRK 619
            :.||.|||.|.|.||.|||.|:|||.|..:|
  Rat   274 FVCPFDGCEKSFIQSNNLKIHILTHAKAGKK 304

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pholNP_001287005.1 zf-C2H2 502..526 CDD:278523 10/30 (33%)
COG5048 <504..614 CDD:227381 77/109 (71%)
C2H2 Zn finger 504..526 CDD:275368 10/21 (48%)
zf-C2H2 531..553 CDD:278523 16/21 (76%)
C2H2 Zn finger 533..553 CDD:275368 14/19 (74%)
zf-H2C2_2 546..571 CDD:290200 21/24 (88%)
C2H2 Zn finger 561..583 CDD:275368 21/21 (100%)
zf-H2C2_2 575..602 CDD:290200 18/26 (69%)
C2H2 Zn finger 591..613 CDD:275368 14/21 (67%)
Zfp42XP_002728454.2 C2H2 Zn finger 189..211 CDD:275368 10/21 (48%)
COG5048 <215..>290 CDD:227381 57/74 (77%)
C2H2 Zn finger 218..238 CDD:275368 14/19 (74%)
C2H2 Zn finger 246..268 CDD:275368 21/21 (100%)
C2H2 Zn finger 276..298 CDD:275368 14/21 (67%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D362296at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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