DRSC/TRiP Functional Genomics Resources

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Protein Alignment phol and yy1

DIOPT Version :9

Sequence 1:NP_001287005.1 Gene:phol / 39095 FlyBaseID:FBgn0035997 Length:669 Species:Drosophila melanogaster
Sequence 2:NP_001116880.1 Gene:yy1 / 100126440 XenbaseID:XB-GENE-961263 Length:372 Species:Xenopus tropicalis


Alignment Length:560 Identity:168/560 - (30%)
Similarity:224/560 - (40%) Gaps:236/560 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    77 ESESFLIEEII-----DDYDDEANIVVDSGEFFEHYEYYPVDRLDRLTSVTVATADALPP---PI 133
            |.||..:|.|.     ||.||:.:.|       .|:.:.|:..|..|.|     .||:.|   .:
 Frog    27 EVESIPVETIETTVVGDDEDDDDDPV-------HHHHHQPMIALQPLDS-----DDAVHPHHQEV 79

  Fly   134 IMQQTSDDEEFIEEDGQQMTSSCDGDGDEDDEATAPATTNAFEIASEMLTTIEATNIKEEQLESD 198
            |:.||.  ||.:..|...:.:.   ||.||                ::|..:.|...::|.:|..
 Frog    80 ILVQTR--EEVVGGDDSDLRAD---DGFED----------------QILIPVPAPAGEDEYIEQT 123

  Fly   199 FYMKATEDSNSSNGQLQDFKLFGSSRVERPMGNS-------AAKRWKQTKVPIRITQDEFNVTLW 256
            .   .|....||.|::   |..|....::....|       :.::|:|.:|.|:..:.||:||:|
 Frog   124 L---VTVAGKSSGGRM---KKGGGGSGKKSSKKSYLSGAEPSGRKWEQKQVQIKTLEGEFSVTMW 182

  Fly   257 SSLNSEDEDEEEELEEPPGCAGTTSVTSSSAAQNEGSPSMPKLIIDEHMINHDVLSDGIGNEYVI 321
            :|.:.:|.|.|..:||                |..|..|.|..                 :||:.
 Frog   183 ASDDKKDIDHETVVEE----------------QIIGENSPPDY-----------------SEYMT 214

  Fly   322 ---LPDPFSASAVTDVEEVVNAFMGDVKGEEDSQPLSEQLIYAENQLEEAYGNIELIENMPNNVE 383
               ||.                  |.:.|.:.|.|                              
 Frog   215 GKKLPP------------------GGIPGIDLSDP------------------------------ 231

  Fly   384 LIQTPGPGPATVSVALSKVNGCVPNPQPALPKLVLQNSSTNVRLKSAGNQSKVTKRQLTAAAQVA 448
                                                                   :||...|:: 
 Frog   232 -------------------------------------------------------KQLAEFARM- 240

  Fly   449 TPNPPPPLVASSNPARPQRPTIVTKLPTAVANQTAGNAMGAAGAAGEEDEEPK-FRCTHRGCNKE 512
                           :|::.                          :||:.|: ..|.|:||.|.
 Frog   241 ---------------KPRKI--------------------------KEDDAPRTIACPHKGCTKM 264

  Fly   513 FRNHSAMRKHMHTHGPRGHVCNVCGKSFVESSKLKRHQLVHTGEKPFECTFEGCGKRFSLDFNLR 577
            ||::||||||:||||||.|||..|||:||||||||||||||||||||:|||||||||||||||||
 Frog   265 FRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNLR 329

  Fly   578 THVRIHTGDRPYHCPIDGCSKCFAQSTNLKSHMLTHTKPK 617
            ||||||||||||.||.|||:|.||||||||||:|||.|.|
 Frog   330 THVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
pholNP_001287005.1 zf-C2H2 502..526 CDD:278523 14/23 (61%)
COG5048 <504..614 CDD:227381 92/109 (84%)
C2H2 Zn finger 504..526 CDD:275368 14/21 (67%)
zf-C2H2 531..553 CDD:278523 18/21 (86%)
C2H2 Zn finger 533..553 CDD:275368 16/19 (84%)
zf-H2C2_2 546..571 CDD:290200 23/24 (96%)
C2H2 Zn finger 561..583 CDD:275368 21/21 (100%)
zf-H2C2_2 575..602 CDD:290200 22/26 (85%)
C2H2 Zn finger 591..613 CDD:275368 17/21 (81%)
yy1NP_001116880.1 COG5048 <226..365 CDD:227381 100/265 (38%)
C2H2 Zn finger 256..278 CDD:275368 14/21 (67%)
C2H2 Zn finger 285..305 CDD:275368 16/19 (84%)
C2H2 Zn finger 313..335 CDD:275368 21/21 (100%)
C2H2 Zn finger 343..365 CDD:275368 17/21 (81%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 97 1.000 Domainoid score I7172
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 259 1.000 Inparanoid score I3041
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D362296at33208
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR14003
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
77.070

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