DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3529 and GGA2

DIOPT Version :9

Sequence 1:NP_648315.1 Gene:CG3529 / 39093 FlyBaseID:FBgn0035995 Length:543 Species:Drosophila melanogaster
Sequence 2:NP_011976.1 Gene:GGA2 / 856508 SGDID:S000001150 Length:585 Species:Saccharomyces cerevisiae


Alignment Length:522 Identity:128/522 - (24%)
Similarity:208/522 - (39%) Gaps:125/522 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly     9 ALGNVFSTPVGQRIEAATDANLASENWAANMEICDMINESSDTA-RDAMRAIRKRLSQNAGKNNQ 72
            ||||    |:.::|:.|...:||..:.|.|::|.|.|||....| |||..|:.|.::   .:.:.
Yeast    21 ALGN----PLLRKIQRACRMSLAEPDLALNLDIADYINEKQGAAPRDAAIALAKLIN---NRESH 78

  Fly    73 VVMYTLTVLETCVKNCGKAFHVLVAQKDFINELVKLIGPKNDPP---AAMQEKVLSLIQIW---- 130
            |.::.|::|:..|||||..||:.:::|:|:|||||..  ...||   :.:|..:|:.|:.|    
Yeast    79 VAIFALSLLDVLVKNCGYPFHLQISRKEFLNELVKRF--PGHPPLRYSKIQRLILTAIEEWYQTI 141

  Fly   131 --ADAFKNQPDLNGVTQMYMELKNKGIEFP---ANDLDAMAPIYTPQRSVPEMPPQLVAAQQHTI 190
              ..::||  |:..:..|:..||.||..||   .:||..:.| ....::..|:..:...||...:
Yeast   142 CKHSSYKN--DMGYIRDMHRLLKYKGYAFPKISESDLAVLKP-SNQLKTASEIQKEQEIAQAAKL 203

  Fly   191 -------SPQHMAAAAAAAAAAAAPPSTGPLHLTPEQAAKLRSELEIVSNNMSILSEMLSVLKPG 248
                   .|:.:..|.......|.......:.  .:||  :.|||..:.....:|:|||      
Yeast   204 EELIRRGKPEDLREANKLMKIMAGFKEDNAVQ--AKQA--ISSELNKLKRKADLLNEML------ 258

  Fly   249 QESPD----DYALLNELTSTCKEMQSRIVDLIGRVQ-DDELTAEFLRINDELNNVFLRHQRYEKN 308
             ||||    |.....||.|..|..|.:...:|...| ||.|..:.|:.||.:|.:..:....:..
Yeast   259 -ESPDSQNWDNETTQELHSALKVAQPKFQKIIEEEQEDDALVQDLLKFNDTVNQLLEKFNLLKNG 322

  Fly   309 RSQGQGAGVTSPSAVLGAAMGLPGVGAAGAGATTVATLPPPPTTTAVSNTPQSDQLLIDLIESSE 373
            .|  ..|....||.|                     :.|...::.|::|.       |:||:.::
Yeast   323 DS--NAASQIHPSHV---------------------SAPLQQSSGALTNE-------INLIDFND 357

  Fly   374 EAQLPQSLGQISLGGGAPIGVQRSARPADEFDMLAQSRTDGNHKSDLLRDIPSVDAAAGSVTATA 438
            ..:.|......:.|.|.|...:.|.                   :|||.|:..:..:        
Yeast   358 LDEAPSQGNNNTNGTGTPAAAETSV-------------------NDLLGDLTDLSIS-------- 395

  Fly   439 SPYKPNQPQQAQRSAG----------EPPVVSKSTKENEIDEMEAWLGSSHIE---GIEELTSSE 490
               .|:...||....|          .|||.:.:...|.:|    .||.|..:   ..:.:.||.
Yeast   396 ---NPSTANQASFGLGGDIVLGSSQPAPPVTTTNNSNNTLD----LLGLSTPQSPTNSQAVNSSG 453

  Fly   491 FD 492
            ||
Yeast   454 FD 455

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3529NP_648315.1 VHS_Tom1 17..158 CDD:239623 49/150 (33%)
GAT_TOM1_like 222..307 CDD:260091 26/89 (29%)
GGA2NP_011976.1 VHS_GGA_fungi 26..164 CDD:340795 46/144 (32%)
GGA_N-GAT 199..233 CDD:408115 4/33 (12%)
GAT_GGA_fungi 235..324 CDD:410583 28/99 (28%)
Alpha_adaptinC2 475..583 CDD:397151
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C157341412
Domainoid 1 1.000 74 1.000 Domainoid score I2155
eggNOG 1 0.900 - - E1_KOG1087
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 96 1.000 Inparanoid score I1492
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoFinder 1 1.000 - - FOG0000599
OrthoInspector 1 1.000 - - otm46737
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2130
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
87.820

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