DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3529 and tom1

DIOPT Version :9

Sequence 1:NP_648315.1 Gene:CG3529 / 39093 FlyBaseID:FBgn0035995 Length:543 Species:Drosophila melanogaster
Sequence 2:NP_001016770.1 Gene:tom1 / 549524 XenbaseID:XB-GENE-5834946 Length:495 Species:Xenopus tropicalis


Alignment Length:564 Identity:226/564 - (40%)
Similarity:303/564 - (53%) Gaps:103/564 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 LGNVFSTPVGQRIEAATDANLASENWAANMEICDMINESSDTARDAMRAIRKRLSQNAGKNNQVV 74
            |||.|:||||||||.|||.:|.||:|..|||:||:|||:.|..:||:||::||:..|  ||.:.|
 Frog     5 LGNAFATPVGQRIEKATDGSLRSEDWGLNMEVCDIINETEDGPKDAIRALKKRIVGN--KNFREV 67

  Fly    75 MYTLTVLETCVKNCGKAFHVLVAQKDFI-NELVKLIGPKNDPPAAMQEKVLSLIQIWADAFKNQP 138
            |..||:|||||||||..|||||..::|: ..|||.|.|||:|||.:.:|||.|||.|||||::.|
 Frog    68 MLALTLLETCVKNCGHRFHVLVGSQEFVEGVLVKTILPKNNPPAIVHDKVLILIQAWADAFRSSP 132

  Fly   139 DLNGVTQMYMELKNKGIEFPANDLDAMAPIYTPQR--SVPEMPPQLVAAQQ---------HTISP 192
            ||.||..:|.:|:.||:|||..|||.::||:|||.  |.||.|.|......         |:..|
 Frog   133 DLTGVVSVYEDLRRKGLEFPMTDLDTLSPIHTPQPSFSAPESPSQQDCPSSEFPQRGGSVHSEPP 197

  Fly   193 QHMAAAAAAAAAAAAPPSTGPLHLTPEQAAKLRSELEIVSNNMSILSEMLSVLKPGQESPDDYAL 257
            .:...|.|:...|..|        ||:|.|||.||||||:.|..::||||:.|.|......|..|
 Frog   198 PYNVPATASGDTAVTP--------TPDQLAKLHSELEIVNGNAKVMSEMLTELVPQTAKQSDVEL 254

  Fly   258 LNELTSTCKEMQSRIVDLIGRVQDDELTAEFLRINDELNNVFLRHQRYEKNRSQGQGAGVTSPSA 322
            |.||..||:.||.|:::||.||..::||.|.|.:||.|||||:||:|:|:..:..||.       
 Frog   255 LQELNRTCRAMQQRVLELIPRVTHEQLTEELLIVNDNLNNVFIRHERFERMLAGQQGP------- 312

  Fly   323 VLGAAMGLPGVGAAGAGATTVATLPPPPTTTAVSNTPQSDQLLIDLIE--SSEEAQLPQSLGQIS 385
                        .|.|.......|||.               ||||.|  |:....|...|..|:
 Frog   313 ------------VAEAQVARDRVLPPS---------------LIDLEETPSNSAPTLSTQLAGIN 350

  Fly   386 LGGGAPIGVQRS----ARPADEFDMLAQSRTDGNHKSDLLRDI-----PSVDAAAGSVTATASPY 441
            |..|:..|..:|    .:|.|:|||.|.:|  |:..:|..:.:     .:.|..||::       
 Frog   351 LSSGSVSGTLQSLGGTKKPDDDFDMFALTR--GSSLADQRKSVKYEEPQATDGLAGAL------- 406

  Fly   442 KPNQPQQAQRSAGEPPVVSKSTKENEIDEMEAWLGS---SHIEGIEELTSSEFDKFLEERAAAAE 503
                 ...|::.|..|    :.:.|.:|::|.||.|   ..|||.:.:||.||||||||||.||:
 Frog   407 -----DTRQQNTGAIP----AAQNNFMDDIEKWLSSDTGEEIEGEDGVTSEEFDKFLEERAKAAD 462

  Fly   504 NLPTISASNSAASATTGSAGADSLRKTPK----KPGAEEDLLAL 543
            .:|::|           |.|.:..|..|.    |..||:.|.||
 Frog   463 RIPSLS-----------SPGTEPPRAAPSTKRDKKEAEDALFAL 495

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3529NP_648315.1 VHS_Tom1 17..158 CDD:239623 82/141 (58%)
GAT_TOM1_like 222..307 CDD:260091 44/84 (52%)
tom1NP_001016770.1 VHS_Tom1 12..148 CDD:340792 79/137 (58%)
GAT_TOM1 215..309 CDD:260094 47/93 (51%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 1 1.000 175 1.000 Domainoid score I3599
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 369 1.000 Inparanoid score I2091
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D352228at33208
OrthoFinder 1 1.000 - - FOG0000599
OrthoInspector 1 1.000 - - otm48230
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 1 1.000 - - X466
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
66.060

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