DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3529 and Gga2

DIOPT Version :9

Sequence 1:NP_648315.1 Gene:CG3529 / 39093 FlyBaseID:FBgn0035995 Length:543 Species:Drosophila melanogaster
Sequence 2:NP_001093989.1 Gene:Gga2 / 293455 RGDID:1304800 Length:604 Species:Rattus norvegicus


Alignment Length:480 Identity:110/480 - (22%)
Similarity:209/480 - (43%) Gaps:73/480 - (15%)


- Green bases have known domain annotations that are detailed below.


  Fly    22 IEAATDANLASENWAANMEICDMINESSDTARDAMRAIRKRLSQNAGKNNQVVMYTLTVLETCVK 86
            :..||:.::|.::|:|..:.|:.:|........|...:..::.   ....:..:|.|||||.|:.
  Rat    33 LNKATNPSMAEQDWSAIQKFCEQVNTDPSGPTHAPWLLAHKIQ---SPQEREALYALTVLEICMN 94

  Fly    87 NCGKAFHVLVAQKDFINELVKLIGPKNDPPAAMQE---KVLSLIQIWADAFKNQPDLNGVTQMYM 148
            :||:.||..||:..|:|||:|::.||.....|.::   :|:.::..|...|   |:...:...|.
  Rat    95 HCGEKFHNEVAKFRFLNELIKVLSPKYLGAWATEKVKGRVIEILFSWTVWF---PEDIKIRDAYQ 156

  Fly   149 ELKNKGI--EFPANDLDAMAPIYTP-QRSV---PEMPPQLVAAQQHTISPQHMAAAAAAAAAAAA 207
            .||.:||  :.|...:|.:.|..:| .:|:   .|...:|:.....:..|:.:.||.....    
  Rat   157 MLKKQGIIKQDPKLPMDKILPPPSPWPKSIFDADEEKSKLLTRLLKSNHPEDLQAANRLIK---- 217

  Fly   208 PPSTGPLHLTPEQAAKLR------SELEIVSNNMSILSEMLSVL-KPGQESPDDYALLNELTSTC 265
                   :|..|:..|..      |.:|.|.:::.:|.||||:. :||...||..| |..:...|
  Rat   218 -------NLVKEEQEKSEKVSRRVSAVEEVRSHVRVLREMLSMYRRPGHALPDQQA-LQVVYERC 274

  Fly   266 KEMQSRIVDLIG-RVQDDELTAEFLRINDELNNVFLRHQRYEKNRSQGQGAGVTSPSAV--LGAA 327
            ::::..:..|.. ...||:..||.|:.||.|....|.:::..:.|   ..||...|:||  :.|:
  Rat   275 EKLRPTLFRLASDTTDDDDALAEILQANDLLTQGVLLYKQVVEGR---VNAGNAVPAAVGAIPAS 336

  Fly   328 MGLPGVGAAGAGATTV-----ATLPPPPTTTAVSNTPQSDQLLIDLIESSEEAQLPQSLGQISLG 387
            ...|.....|.....:     :.|........:::.|..:|::|.  ...::.:.|   |.|:|.
  Rat   337 RVFPSPEPCGKNCPLIDLEAPSLLHQDLAALGINDVPTRNQVVIP--SCCKDKKQP---GAITLM 396

  Fly   388 GGAPIGVQRSARPADEFDMLAQSRTDG--NH--KSDLLRDIPSVDAA-------AGSVTATASPY 441
            ||   |:|..:...:..|:.:...:.|  |:  :..:.:::|....|       ||.:  .:||.
  Rat   397 GG---GIQSLSADRNLLDLFSPQPSPGPLNYVPQKSIPKEVPPGTKASPGWSWEAGPL--ASSPA 456

  Fly   442 KPNQ-------PQQAQRSAGEPPVV 459
            ..|.       |.::.:.:..||::
  Rat   457 SQNTPLAHVFVPLESVKPSSLPPII 481

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3529NP_648315.1 VHS_Tom1 17..158 CDD:239623 38/140 (27%)
GAT_TOM1_like 222..307 CDD:260091 26/92 (28%)
Gga2NP_001093989.1 VHS_GGA 29..166 CDD:239624 38/138 (28%)
ATP-synt_B <186..>242 CDD:304375 11/66 (17%)
GAT_SF 229..317 CDD:296121 25/88 (28%)
Alpha_adaptinC2 482..596 CDD:197886 110/480 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C166334903
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.840

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