DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG3529 and GGA1

DIOPT Version :9

Sequence 1:NP_648315.1 Gene:CG3529 / 39093 FlyBaseID:FBgn0035995 Length:543 Species:Drosophila melanogaster
Sequence 2:NP_001350700.1 Gene:GGA1 / 26088 HGNCID:17842 Length:656 Species:Homo sapiens


Alignment Length:564 Identity:129/564 - (22%)
Similarity:221/564 - (39%) Gaps:103/564 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly    21 RIEAATDANLASENWAANMEICDMINESSDTARDAMRAIRKRLSQNAGKNNQVVMYTL------- 78
            ||..||:......:||:....|:.:||..:....|.|.:..:: |:..:...:...|:       
Human    13 RINRATNPLNKELDWASINGFCEQLNEDFEGPPLATRLLAHKI-QSPQEWEAIQALTVRRGEATI 76

  Fly    79 --------TVLETCVKNCGKAFHVLVAQKDFINELVKLIGPK---NDPPAAMQEKVLSLIQIWAD 132
                    .|||||:|:|||.||..|.:..|:|||:|::.||   :.....::.|:|.|:..|..
Human    77 RPPPCDDTKVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV 141

  Fly   133 AFKNQPDLNGVTQMYMELKNKGI--EFPANDLDAMAPIYTPQ-RSV---PEMPPQLVAAQQHTIS 191
            ..   |:...:.:.|..||.:||  ..|....|...|:..|: ::|   .|...:::|....:..
Human   142 GL---PEEVKIAEAYQMLKKQGIVKSDPKLPDDTTFPLPPPRPKNVIFEDEEKSKMLARLLKSSH 203

  Fly   192 PQHMAAAAAAAAAAAAPPSTGPLHLTPEQAAKLRSELEIVSNNMSILSEM-LSVLKPGQESPDDY 255
            |:.:.||.............     ..|:.:|..:.:|.|:||:.:|:|| :|..:.|..:....
Human   204 PEDLRAANKLIKEMVQEDQK-----RMEKISKRVNAIEEVNNNVKLLTEMVMSHSQGGAAAGSSE 263

  Fly   256 ALLNELTSTCKEMQSRIVDLIGRVQD-DELTAEFLRINDELNNV------FLRHQRYEKNRSQGQ 313
            .|:.||...|:.|:..:..|....:| ||..||.|:.||.|..|      .:|.:....:.:.|.
Human   264 DLMKELYQRCERMRPTLFRLASDTEDNDEALAEILQANDNLTQVINLYKQLVRGEEVNGDATAGS 328

  Fly   314 GAGVTSPSAVLGAAMGLPGVGAAGAGATTVATLPPPPTTTAVSNTPQSDQLLIDLIESSEEAQLP 378
            ..|.||      |.:.|.|:....|| ||...:|..|...|....|.:...|:|           
Human   329 IPGSTS------ALLDLSGLDLPPAG-TTYPAMPTRPGEQASPEQPSASVSLLD----------- 375

  Fly   379 QSLGQISLGGGAPIGVQRSARPADEFDMLAQSRTDGNHKSDLLRDIPSVDAAAGSVTATASPYKP 443
            ..|..:.|....|        |:.                      ||:|....:...::...:|
Human   376 DELMSLGLSDPTP--------PSG----------------------PSLDGTGWNSFQSSDATEP 410

  Fly   444 NQPQQAQRSAGE--PPVVSKSTKENEIDEMEAWLGSSHIEGIEELTSSEFDKFLEERAAAAENLP 506
            ..|..||..:.|  ||..:.....:.:|:::. ||.:.   :::....|..:...|:......|.
Human   411 PAPALAQAPSMESRPPAQTSLPASSGLDDLDL-LGKTL---LQQSLPPESQQVRWEKQQPTPRLT 471

  Fly   507 TISASNSAASATTGSAGADSLRKT--------PKKPGAEEDLLA 542
            .....|.::|.::.|:.|.||..|        |::|...|..||
Human   472 LRDLQNKSSSCSSPSSSATSLLHTVSPEPPRPPQQPVPTELSLA 515

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG3529NP_648315.1 VHS_Tom1 17..158 CDD:239623 42/156 (27%)
GAT_TOM1_like 222..307 CDD:260091 27/92 (29%)
GGA1NP_001350700.1 VHS_GGA 9..164 CDD:239624 42/154 (27%)
GAT_GGA1_GGA2 227..316 CDD:260097 26/88 (30%)
Alpha_adaptinC2 534..648 CDD:197886
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R2130
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.940

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