DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment LAMA3 and NetA

DIOPT Version :9

Sequence 1:XP_011524280.1 Gene:LAMA3 / 3909 HGNCID:6483 Length:3342 Species:Homo sapiens
Sequence 2:NP_001285243.1 Gene:NetA / 32398 FlyBaseID:FBgn0015773 Length:726 Species:Drosophila melanogaster


Alignment Length:714 Identity:180/714 - (25%)
Similarity:289/714 - (40%) Gaps:192/714 - (26%)


- Green bases have known domain annotations that are detailed below.


Human    32 CGATARDPGAAAGLSLHPTYFNLAEAARIWATATCGERGPGEGRPQPELYCKLVGGPTAPGSGHT 96
            |...|.:|.|..     |.:.|.|..|.:.|::|||..|       .:.||:           :.
  Fly    40 CYNKAHEPRACI-----PDFVNAAYDAPVVASSTCGSSG-------AQRYCE-----------YQ 81

Human    97 IQGQFCDYCNSEDPRKAHPVTNAID----GSERWWQSPPLS-SGTQYNRVNLTLDLGQLFHVAYI 156
            ...:.|..|:..||.::.|..:..|    .:...|:|.|:: ||   :.|.|||.||:.|.:.|:
  Fly    82 DHERSCHTCDMTDPLRSFPARSLTDLNNSNNVTCWRSEPVTGSG---DNVTLTLSLGKKFELTYV 143

Human   157 LIKFA-NSPRPDLWVLERSVDFGSTYSPWQYFAHSKVDCLKEFGREANMAVTR--DDDVLCVTEY 218
            :::.. ::||||..|:.:|.|.|.::.|:|:|:.   .|.:.|||.|..:..|  :.:..| ::.
  Fly   144 ILQLCPHAPRPDSMVIYKSTDHGLSWQPFQFFSS---QCRRLFGRPARQSTGRHNEHEARC-SDV 204

Human   219 SRIVPLENGEVVVSLINGRPGAKNFTFSHTLREFTKATNIRLRFLR-----------------TN 266
            :|  ||.: .:..|.:.|||.:::...|..|:::..||:||:.|.|                 |:
  Fly   205 TR--PLVS-RIAFSTLEGRPSSRDLDSSPVLQDWVTATDIRVVFHRLQRPDPQALLSLEAGGATD 266

Human   267 TLLGHLISKAQRDP--------------TVTRRYYYSIKDISIGGQCVCNGHAEVCNINNPEKLF 317
            ...|.........|              |.....:|:|.|.|:||:|.|||||..|:.:...:| 
  Fly   267 LASGKYSVPLANGPAGNNIEANLGGDVATSGSGLHYAISDFSVGGRCKCNGHASKCSTDASGQL- 330

Human   318 RCECQHHTCGETCDRCCTGYNQRRWRPAAWEQSHECEACNCHGHASNCYYDPDVERQQASLNTQG 382
            .|||.|:|.|..|:||...:..|.|..|..::::||:.|||:.||..|.::.::.|.     :||
  Fly   331 NCECSHNTAGRDCERCKPFHFDRPWARATAKEANECKECNCNKHARQCRFNMEIFRL-----SQG 390

Human   383 IYAGGGVCINCQHNTAGVNCEQCAKGYYRPYGVPVDAPDGCIPCSCDPEHADG--CEQGSGRCHC 445
            :  .||||.||:|:|.|.||.||.:|:||....|:.....|..|.|.|..:.|  |...||:|.|
  Fly   391 V--SGGVCQNCRHSTTGRNCHQCKEGFYRDATKPLTHRKVCKACDCHPIGSSGKICNSTSGQCPC 453

Human   446 KPNFHGDNCEKCAIGYY----NFPFCLRIPIFPV-------STPSSEDPVAGDIKGCDCN----- 494
            |....|..|.:||.||.    :...|::.|...:       :.|..::|.:....|.|.|     
  Fly   454 KDGVTGLTCNRCARGYQQSRSHIAPCIKQPPRMINMLDTQNTAPEPDEPESSPGSGGDRNGAAGM 518

Human   495 --------LEGVLPEICDAHGRCLCRPGVEGPRCDTCRSGFYSFPICQAC------WCSALGSYQ 545
                    .||                   |..|..||.......:.:.|      ....:|. .
  Fly   519 AAQSQYYRTEG-------------------GRECGKCRVSTKRLNLNKFCKRDYAIMAKVIGR-D 563

Human   546 MPCSSVTGQCECR---PGVTGQRCDRC--------LSGAYDF---------PHCQG--------- 581
            ....:|:.:.:.|   |.|.....|:.        ::|.|:|         |:.:|         
  Fly   564 TSSEAVSREVQRRAMDPDVADYEMDQVQPGSARSPITGVYEFQAADYPNPNPNPRGSEMERFDLQ 628

Human   582 ------------SSSACDPAGTINSNLGYCQCKLHVEGPTCSRCKLLYWNLDKENPSGCSECKC 633
                        ||.|.:..|..|:.|        ..||       :.|.:    |:...||:|
  Fly   629 IQAVFKRSRPGESSGAGNVYGMPNTTL--------KRGP-------MTWII----PTKDLECRC 673

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
LAMA3XP_011524280.1 LamNT 46..297 CDD:214532 71/289 (25%)
EGF_Lam 299..344 CDD:238012 19/44 (43%)
Laminin_EGF 356..423 CDD:278482 26/66 (39%)
EGF_Lam 425..465 CDD:238012 16/45 (36%)
Laminin_EGF 491..538 CDD:278482 9/65 (14%)
EGF_Lam 535..577 CDD:238012 10/67 (15%)
Laminin_EGF 585..628 CDD:278482 8/42 (19%)
EGF_Lam 631..682 CDD:238012 2/3 (67%)
EGF_Lam 684..727 CDD:238012
Laminin_EGF 1275..1323 CDD:278482
EGF_Lam 1365..1410 CDD:238012
EGF_Lam 1413..1463 CDD:238012
LamB 1523..1650 CDD:214597
EGF_Lam 1695..1741 CDD:238012
Laminin_EGF 1743..1793 CDD:278482
Laminin_I 1854..2113 CDD:283627
Laminin_I 2071..2357 CDD:283627
ApoLp-III_like 2101..2265 CDD:304399
Laminin_II 2297..2425 CDD:283628
LamG 2444..2579 CDD:214598
LamG 2611..2751 CDD:238058
LamG 2778..2910 CDD:238058
LamG 3003..3143 CDD:238058
LamG 3167..3318 CDD:238058
NetANP_001285243.1 LamNT 44..280 CDD:214532 68/268 (25%)
EGF_Lam 312..357 CDD:238012 19/45 (42%)
EGF_Lam 369..426 CDD:238012 26/63 (41%)
EGF_Lam 431..479 CDD:238012 16/47 (34%)
NTR_netrin-1_like 545..723 CDD:239634 25/149 (17%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
10.910

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