DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cpsf5 and AT4G25550

DIOPT Version :9

Sequence 1:NP_001036597.1 Gene:Cpsf5 / 39083 FlyBaseID:FBgn0035987 Length:237 Species:Drosophila melanogaster
Sequence 2:NP_194285.2 Gene:AT4G25550 / 828660 AraportID:AT4G25550 Length:200 Species:Arabidopsis thaliana


Alignment Length:195 Identity:114/195 - (58%)
Similarity:141/195 - (72%) Gaps:1/195 - (0%)


- Green bases have known domain annotations that are detailed below.


  Fly    41 LTINRTINLYPLTNYTFGTKEPLFEKDPSVPSRFQRMREEFDRIGMRRSVEGVLLVHEHGLPHVL 105
            :.:::.:|.|||:||:||||||..|||.||..|..||:..:.:.|||.||||:|||.||..||:|
plant     1 MAMSQVVNTYPLSNYSFGTKEPKLEKDTSVADRLARMKINYMKEGMRTSVEGILLVQEHNHPHIL 65

  Fly   106 LLQLGTTFFKLPGGELNAGEDEVEGLKRLLSETL-GRQDGVKQEWIVEDTIGNWWRPNFEPPQYP 169
            |||:|.||.|||||.|..||:|.:||||.|:..| |....:..:|.|.:.:..|||||||...||
plant    66 LLQIGNTFCKLPGGRLKPGENEADGLKRKLTSKLGGNSAALVPDWTVGECVATWWRPNFETMMYP 130

  Fly   170 YIPPHITKPKEHKRLFLVQLHEKALFAVPKNYKLVAAPLFELYDNSQGYGPIISSLPQALCRFNF 234
            |.|||||||||.|||::|.|.||..||||||.||:|.||||||||.|.|||:||::||.|.||:|
plant   131 YCPPHITKPKECKRLYIVHLSEKEYFAVPKNLKLLAVPLFELYDNVQRYGPVISTIPQQLSRFHF 195

  Fly   235  234
            plant   196  195

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cpsf5NP_001036597.1 NUDIX_2 45..232 CDD:404710 111/187 (59%)
AT4G25550NP_194285.2 NUDIX_2 5..193 CDD:404710 111/187 (59%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 236 1.000 Domainoid score I615
eggNOG 1 0.900 - - E1_KOG1689
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H5090
Inparanoid 1 1.050 242 1.000 Inparanoid score I1077
OMA 1 1.010 - - QHG54579
OrthoDB 1 1.010 - - D1194206at2759
OrthoFinder 1 1.000 - - FOG0006316
OrthoInspector 1 1.000 - - oto3876
orthoMCL 1 0.900 - - OOG6_102904
Panther 1 1.100 - - LDO PTHR13047
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X4023
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.840

Return to query results.
Submit another query.