Protein Alignment LAMA2 and nsp1

DIOPT Version :9

• Sequence 1: XP_016866340.1
• Gene: LAMA2 / 3908
• HGNCID: 6482
• Length: 3212
• Species: Homo sapiens
• Sequence 2: NP_594158.1
• Gene: nsp1 / 2542668
• PomBaseID: SPAC26A3.15c
• Length: 598
• Species: Schizosaccharomyces pombe
• Alignment Length: 556
• Identity: 110/556 - (19%)
• Similarity: 162/556 - (29%)
• Gaps: 169/556 - (30%)

Human  1493 SQPGGRT--------------PGPTLGTCVPCQCNGHSSLCDP-ETSICQNCQHHTAGDFCERCA 1542
            :.|.|.|              |..|..|..|...:..|....| .|....|..  .|.......|
pombe   134 TNPSGSTFNFGSSNNSFNFGKPASTTNTTTPAAASTGSLFGKPAATGTTSNAP--PASSTSTTPA 196

Human  1543 LGYYGIVKGLPNDCQQCACPLISSSNNFSPSCVAEGLDDYRCTACPRGYE-GQYCERCAPG---- 1602
            .|..|...|.|..        :.|:||.|.|..|..           |:. |:.....|||
pombe   197 TGSGGFSFGKPAS--------LGSTNNASTSTTANS-----------GFSFGKPATTSAPGSNTT 242

Human  1603 YTGSPGNPGGSCQECECDPYGSLPVPCDPVTGFCTCRP-----------GATGRKCDGCKHWHAR 1656
            .|.|....|.:..:......||.     |.|||...:|           |.|.....|
pombe   243 VTPSSSITGTNDSKPAASNTGSA-----PTTGFSFGKPAGQAASTATDKGTTTTSSAG------- 295

Human  1657 EGWECVFCGDECTGLLLGDLARLEQMVMSINLTGPLPAPYKMLYGLENMTQELKHLLS---PQRA 1718
                        ||...|..|..|.       |....||..........|.:.|...|   ..:.
pombe   296 ------------TGFSFGKPATTED-------TNKPTAPNSAFTKPATSTGDNKPTFSFGNTSKP 341

Human  1719 PERLIQLAEGNLNTLVTEMNELLTRATKVTADGEQT------GQDAERTNTRAKSLGEFIKELAR 1777
            .|        |.:|..|.... |:..||......||      |:.|..|.|.....|........
pombe   342 TE--------NTSTTATSAPP-LSNNTKPAEGANQTSSGFSFGKPATDTTTSTSKTGPLFGNKPA 397

Human  1778 DAEAVNEKAIKLNETLGTRDEAFERNLEGLQKEIDQMIKELRRKNLETQKEIA----------ED 1832
            |..|      |...|..|...  |.....::.:..|.|......:|.||.|:.          :.
pombe   398 DPSA------KPGATASTTPS--EPPPSSIKHKTLQEILNKWSTDLTTQTEVFNKLCDQVSDWDR 454

Human  1833 ELVAAEALLKKVKKLFGESRGENEEMEKDLREKLADYKNKVDDAWDLLREATDKIREANRLFAVN 1897
            .||...||   :.||:.|: .|.|:|           .|::||..:.:..:..:      ||
pombe   455 TLVDNGAL---ISKLYTET-VEAEQM-----------SNRIDDGLEYVSSSQQE------LF--- 495

Human  1898 QKNMTALEKKKEAVESGKRQIENTLKE-----GNDILDEANRLADEINSIIDYVEDIQTKLPPMS 1957
             |.:.:.|.:.|..:.......|..:|     .:|||...:||.:::.::|:.:.|.......:|
pombe   496 -KLLDSYETQLETFDGRATSALNVERERAFGVADDILSRLDRLGEDLGTVINQMNDFSKPDDSIS 559

Human  1958 E--------------------ELNDKIDDLSQEIKD 1973
            |                    ::.:|:|.:.::..|
pombe   560 EIVKVLNAQLASLGWVENRIFQMEEKLDTIKKKNSD 595

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
LAMA2	XP_016866340.1	None
nsp1	NP_594158.1	Nsp1_C	407..520	CDD:282867	27/139 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	1	0.910