Sequence 1: | XP_016866340.1 | Gene: | LAMA2 / 3908 | HGNCID: | 6482 | Length: | 3212 | Species: | Homo sapiens |
---|---|---|---|---|---|---|---|---|---|
Sequence 2: | NP_492775.2 | Gene: | lam-3 / 172952 | WormBaseID: | WBGene00002248 | Length: | 3102 | Species: | Caenorhabditis elegans |
Alignment Length: | 3237 | Identity: | 1071/3237 - (33%) |
---|---|---|---|
Similarity: | 1595/3237 - (49%) | Gaps: | 449/3237 - (13%) |
- Green bases have known domain annotations that are detailed below.
Human 39 RGLFPAVLNLASNALITTNATCGEKGPEMYCKLVEHVPGQPVRN---PQCRICNQNSSNPNQRHP 100
Human 101 ITNAIDGKNTWWQSPSIKNGIEYHYVTITLDLQQVFQIAYVIVKAANSPRPGNWILERSLDDVEY 165
Human 166 KPWQYHAVTDTECLTLYNIYPRTGPPSYAKDDEVICTSFYSKIHPLENGEIHISLINGRPSADDP 230
Human 231 SPELLEFTSARYIRLRFQRIRTLNADLMMFAHKDPREIDPIVTRRYYYSVKDISVGGMCICYGHA 295
Human 296 RACPLDPATNKSRCECEHNTCGDSCDQCCPGFHQKPWRAGTFLTKTECEACNCHGKAEECYYDEN 360
Human 361 VARRNLSLNIRGKYIGGGVCINCTQNTAGINCETCTDGFFRPKGVSPNYPRPCQPCHCDPIGSLN 425
Human 426 EVCVKDEKHARRGLAPGSCHCKTGFGGVSCDRCARGYTGYPDCKACNCSGLGSKNEDPCFG-PCI 489
Human 490 CKENVEGGDCSRCKSGFFNLQEDNWKGCDECFCSGVSNRCQSSYWTYGKIQDMSGWYLTDLPGRI 554
Human 555 RVAPQQDDLDSPQQISISNAEARQ--ALPHSYYWSAPAPYLGNKLPAVGGQLTFTISYDLEEEEE 617
Human 618 DTERVLQLMIILEGNDLSISTAQDEVYLHPSEEHTNVLLLKEESFTI------------HGTHFP 670
Human 671 VRRKEFMTVLANLKRVLLQITYSFG--MDAIFRLSSVNLESAV----------------SYPTDG 717
Human 718 SIAAAVEVCQCPPGYTGSSCESCWPRHRRVNGTIFGGICEPCQCFGHAESCDDVTGECLNCKDHT 782
Human 783 GGPYCDKCLPGFYGEPTKGTS-EDCQPCACP-LNIPSNNFSPTCHLDRSLGL-----------IC 834
Human 835 DGCPVGYTGPRCERCAEGYFGQPSVPGGSCQPCQCNDNLDFSIPGSCDSLSGSCLICKPGTTGRY 899
Human 900 CELCADGYFGDAVDAKNCQPCRCNAGGSFSEVCHSQTGQCECRANVQGQRCDKCKPNMWRDPEKR 964
Human 965 FCVLCDCDPVGSVSPQCD-ITGRCVCKSGFVGKQCNLGRQVHQQEEQPRRAQ------------- 1015
Human 1016 RVLGSPQRWAIGSSSG-CP-----RGAYRAPAPAGTFGLQSARGCVPCNCNSFGSKSFDCE-ESG 1073
Human 1074 QCWCQPGVTGKKCDRCAHGYFNFQEGGCTACE-CSHLGNNCDPKTGRCICPPNTIGEKCSKCAPN 1137
Human 1138 TWGHSITTGCKACNCSTVGSLDFQCNVNTGQCNCHPKFSGAKCTECSRGHWNYPRCNLCDCFLPG 1202
Human 1203 TDATTCDSETKKCSCSDQTGQCTCKVNVEGIHCDRCRPGKFGLDAKNPLGCSSCYCFGTTTQCSE 1267
Human 1268 AKGLIRTWVTLKAEQTILPLVDEALQHTTTKGIVFQHP-EIVA---HMDLMRE-DLHLE------ 1321
Human 1322 -PFYWKLPEQFEGKKLMAYGGKLKYAIYFE--------AREETGFSTYNPQVIIRGGTPTHARII 1377
Human 1378 VRHMAAPL-IGQLTRHEIEMTEKEWKYYGDDPRVHRTVTREDFLDILYDIHYILIKATYGNFMRQ 1441
Human 1442 S--RISEISMEVA------EQGRGTTMTPPADLIEKC-DCPLGYSGLSCEACLPGFYRL--RSQP 1495
Human 1496 GGRTPGPTLGTCVPCQCNGHSSLCDPETSICQNCQHHTAGDFCERCALGYYGIVK-GLPNDCQQC 1559
Human 1560 ACPLISSSNNFSPSCVAEGLD---DYRCTACPRGYEGQYCERCAPGYTGSPGNPGGSCQECECDP 1621
Human 1622 YGSLPVPCDPVTGFCTCRPGATGRKCDGCKHWHAREGWECVFCGDECTGLLLGDLARLEQMVMSI 1686
Human 1687 NLTGPLPAPYKMLYGLENMTQELKHLLSPQRAPERLIQLAE--GNLNTLVTEMNELLTRATK--- 1746
Human 1747 ----VTADGEQTGQDAERTNTRAKSLGEFIKELA-RDAEAVNEKAIKLNETLGTRDEAFERNLEG 1806
Human 1807 LQKEIDQMIKELRRKNLETQKEIAEDELVAAEALLKKV--KKLFGESRGENEEMEKDLREK---- 1865
Human 1866 ---LADYKNKVDDAWDLLREATDKIREANRLFAVNQKNMTALEKKKEAVESGKRQIENTLKEGND 1927
Human 1928 ILDEANRLADEINSIIDYVEDIQ---TKLPPMSEELNDKIDDLSQEIKDRKLAEKVSQAESHAAQ 1989
Human 1990 LN-DSSAVLDGILDEAKNISFNATAAFKAYSNIKDYIDEAEKVAKEAKDLAHEATKLAT---GPR 2050
Human 2051 GLLKEDA-----KGCLQK--------------SFRILNEAKKLANDVKENEDHLNGLKTRIENAD 2096
Human 2097 ARNGDLLRTLNDTLGKLSAIPNDTAA------KLQAV-KDKARQANDTAKDVLAQITELHQNLDG 2154
Human 2155 LKKNYNKLADSVAKTNAVVKDPSKNKIIADADATVKNLEQEADRL--IDKLKPIKE-LEDNLKKN 2216
Human 2217 ISEIKELINQARKQANSIKVSVSSG--GDCIRTYKPEIKKGSYNNIVVNVK--TAVADNLLFYLG 2277
Human 2278 S----AKFIDFLAIEMRKGKVSFLWDVGSGVGRV--EYPDLTI---DDSYWYRIVASRTGR--NG 2331
Human 2332 TISVR-ALDG-------PKASIVPSTHHSTS----PPGYTILDV--DANAMLFVGGLTGKLKKAD 2382
Human 2383 AVRVITFTGCMGETYFDNKPIGLWNFREKEGDCKGCTVSPQVEDSEGTIQFDGEGYALVSRPIRW 2447
Human 2448 YPNISTVMFKFRTFSSSALLMYLATRDLRDFMSVELTDGHIKVSYDLGSGMASVVSNQN-HNDGK 2511
Human 2512 WKSFTLSRIQKQANISI-VDIDTNQEENIATSSSGNNFGLDLKADDKIYFGGLPTLRNLSMKARP 2575
Human 2576 EVNLKKYSGCLKDIEISRTPYNILSSPDY-VGVTKGCSLENVYT---VSFPKPGFVELSPVPIDV 2636
Human 2637 GTEINLSFSTKNESGIILLGSGGTPAPPRRKRRQTGQAYYAILLNRGRLEVHLSTGARTMRKIVI 2701
Human 2702 RPEPNLFHDGREHSVHVERTRGIFTVQVDENR-RYMQNLTVEQPIEVK--KLFVGGAPPEFQPSP 2763
Human 2764 LRNIPP---FEGCIWNLVINSVPMDFARPVSFKNADIGRCAHQKLREDEDGAAPAEIVIQPEPVP 2825
Human 2826 TPA---------------------FPTPTPVLTHGPCAAES-----EPAL--LIGSKQFGLSRNS 2862
Human 2863 HIAIAFDDTKVK-NRLTIELEVRTEAESGLLFYMARINH----------ADFATVQLR-NGLPYF 2915
Human 2916 SYDLGSGDTHTMIPTKINDGQWHKIKIMRSKQEGILYVD--GASNRTISP-----KKADILDVVG 2973
Human 2974 MLYVGGLPINYTTRRIGPVTYSIDGCVRNLHMAEAP-ADLEQPTSSFHVGTC 3024 |
Gene | Sequence | Domain | Region | External ID | Identity |
---|---|---|---|---|---|
LAMA2 | XP_016866340.1 | None | |||
lam-3 | NP_492775.2 | LamNT | 42..294 | CDD:214532 | 139/250 (56%) |
EGF_Lam | 296..343 | CDD:238012 | 29/46 (63%) | ||
EGF_Lam | <384..411 | CDD:214543 | 15/26 (58%) | ||
Laminin_EGF | 423..480 | CDD:278482 | 29/56 (52%) | ||
EGF_Lam | 477..526 | CDD:238012 | 23/48 (48%) | ||
LamB | 583..711 | CDD:214597 | 40/148 (27%) | ||
EGF_Lam | 774..818 | CDD:238012 | 22/43 (51%) | ||
Laminin_EGF | 889..943 | CDD:278482 | 24/54 (44%) | ||
EGF_Lam | 941..985 | CDD:214543 | 15/45 (33%) | ||
EGF_Lam | 988..1033 | CDD:214543 | 18/54 (33%) | ||
EGF_Lam | 1036..1083 | CDD:214543 | 8/46 (17%) | ||
Laminin_EGF | 1086..1134 | CDD:278482 | 21/47 (45%) | ||
EGF_Lam | 1133..1179 | CDD:238012 | 21/45 (47%) | ||
Laminin_EGF | 1181..1229 | CDD:278482 | 21/47 (45%) | ||
Laminin_EGF | 1227..1281 | CDD:278482 | 23/56 (41%) | ||
LamB | 1341..1478 | CDD:214597 | 43/145 (30%) | ||
EGF_Lam | 1539..1583 | CDD:238012 | 23/43 (53%) | ||
EGF_Lam | 1590..1637 | CDD:214543 | 27/50 (54%) | ||
EGF_Lam | 1646..1694 | CDD:238012 | 21/47 (45%) | ||
BAR | 1848..2058 | CDD:299863 | 59/239 (25%) | ||
PspA | 1864..2121 | CDD:224755 | 65/277 (23%) | ||
Laminin_II | 2157..2286 | CDD:283628 | 35/136 (26%) | ||
LamG | 2285..2443 | CDD:214598 | 40/168 (24%) | ||
LamG | 2471..2622 | CDD:238058 | 41/161 (25%) | ||
LamG | 2655..2821 | CDD:238058 | 48/166 (29%) | ||
LamG | 2919..3065 | CDD:238058 | 43/163 (26%) |
Tool | Simple Score | Weighted Score | Original Tool Information | |||
---|---|---|---|---|---|---|
BLAST Result | Score | Score Type | Cluster ID | |||
Compara | 0 | 0.000 | Not matched by this tool. | |||
Domainoid | 1 | 1.000 | 286 | 1.000 | Domainoid score | I953 |
eggNOG | 1 | 0.900 | - | - | E1_KOG1836 | |
Hieranoid | 1 | 1.000 | - | - | ||
Homologene | 1 | 1.000 | - | - | H37306 | |
Inparanoid | 1 | 1.050 | 1440 | 1.000 | Inparanoid score | I51 |
Isobase | 0 | 0.000 | Not matched by this tool. | |||
OMA | 0 | 0.000 | Not matched by this tool. | |||
OrthoDB | 1 | 1.010 | - | - | D128982at2759 | |
OrthoFinder | 1 | 1.000 | - | - | FOG0004257 | |
OrthoInspector | 1 | 1.000 | - | - | otm15507 | |
orthoMCL | 1 | 0.900 | - | - | OOG6_100395 | |
Panther | 1 | 1.100 | - | - | O | PTHR10574 |
Phylome | 1 | 0.910 | - | - | ||
RoundUp | 1 | 1.030 | - | avgDist | Average_Evolutionary_Distance | R2298 |
SonicParanoid | 1 | 1.000 | - | - | X2997 | |
SwiftOrtho | 0 | 0.000 | Not matched by this tool. | |||
TreeFam | 1 | 0.960 | - | - | ||
14 | 13.860 |