DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4080 and AT4G32670

DIOPT Version :9

Sequence 1:NP_001246695.1 Gene:CG4080 / 39079 FlyBaseID:FBgn0035983 Length:617 Species:Drosophila melanogaster
Sequence 2:NP_001320116.1 Gene:AT4G32670 / 829402 AraportID:AT4G32670 Length:860 Species:Arabidopsis thaliana


Alignment Length:69 Identity:32/69 - (46%)
Similarity:38/69 - (55%) Gaps:7/69 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 GSGS-------SQASQNSGDICRICHCESDPQNPLLTPCYCSGSLKYVHQACLQQWLTASETNSC 86
            |||.       |..:..:.||||||....:|.|||..||.|.|||||:|..||..||...:.|.|
plant    12 GSGEAVTTEEVSDINNKAVDICRICQSPEEPDNPLRHPCACRGSLKYIHSDCLFLWLNRRKRNHC 76

  Fly    87 ELCK 90
            |:||
plant    77 EICK 80

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4080NP_001246695.1 RINGv 42..90 CDD:128983 25/47 (53%)
AT4G32670NP_001320116.1 SSM4 27..>125 CDD:227510 28/54 (52%)
RING_CH-C4HC3_MARCH6 32..80 CDD:319616 25/47 (53%)
RING-CH finger (C4HC3-type) 33..79 CDD:319616 24/45 (53%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5183
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D170933at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
32.820

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