DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4080 and Marchf3

DIOPT Version :9

Sequence 1:NP_001246695.1 Gene:CG4080 / 39079 FlyBaseID:FBgn0035983 Length:617 Species:Drosophila melanogaster
Sequence 2:NP_001361156.1 Gene:Marchf3 / 320253 MGIID:2443667 Length:253 Species:Mus musculus


Alignment Length:203 Identity:65/203 - (32%)
Similarity:96/203 - (47%) Gaps:45/203 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 SSQASQNSGDICRICHCESDPQNPLLTPCYCSGSLKYVHQACLQQWLTASETNSCELCKFPFIMH 96
            ::|:..|...:||||| |...|..||:||.|:|:|..:|::||:.||::|.|:.||||.|.|.:.
Mouse    60 ATQSPFNDRPMCRICH-EGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAVE 123

  Fly    97 TKIKPFNEWRSLDISGIERRRL-----CYSVLFHCAAALCVIWSLCVLIERAADDVQRGLID-WP 155
            .|.:|..||........|:|.|     |:  ||....|....| ||:          ||.:| ..
Mouse   124 RKPRPLVEWLRNPGPQHEKRTLFGDMVCF--LFITPLATISGW-LCL----------RGAVDHLH 175

  Fly   156 FWTKL-AVVTVGLTGGIVFMYI---------QCKAYLHLCHRWKARNR--ILLIQ---NAPEK-- 203
            |.::| ||..:.||..:..:|:         .|:.|    :.|:..|:  ||||.   |.|..  
Mouse   176 FSSRLEAVGLIALTVALFTIYLFWTLVSFRYHCRLY----NEWRRTNQRVILLIPKSVNVPSNQQ 236

  Fly   204 ----IHPV 207
                :|.|
Mouse   237 SLLGLHSV 244

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4080NP_001246695.1 RINGv 42..90 CDD:128983 24/47 (51%)
Marchf3NP_001361156.1 RING_CH-C4HC3_MARCH2_like 70..120 CDD:319613 26/50 (52%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG5183
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
21.810

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