DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment UGP and rml-1

DIOPT Version :9

Sequence 1:NP_648300.3 Gene:UGP / 39065 FlyBaseID:FBgn0035978 Length:520 Species:Drosophila melanogaster
Sequence 2:NP_499842.1 Gene:rml-1 / 176814 WormBaseID:WBGene00010665 Length:522 Species:Caenorhabditis elegans


Alignment Length:502 Identity:310/502 - (61%)
Similarity:391/502 - (77%) Gaps:7/502 - (1%)


- Green bases have known domain annotations that are detailed below.


  Fly    19 GHQRAPSDSKEFHEVTKRDALRLLEHDVDRLLETTEKARQPALKAEMGRFADLFGRFIQEEGPAL 83
            |.|::   |:|:...||.:||..:|.::..||.|.:.......|.|:..|.:||.||::.: |.:
 Worm    28 GDQKS---SEEWKTSTKLEALGSMEGELAHLLSTCKPETLNHNKTELSGFRNLFARFLRAK-PTV 88

  Fly    84 DWNKIQKLPENAVMNYSNLKSPKNEQNEIRNMLDKLVVIKLNGGLGTSMGCHGPKSVIPVRSDLT 148
            ||:||:.|||.|:..|.:|....::: .|.:.|.||||:||||||||||||.||||||.||:|||
 Worm    89 DWSKIEPLPEGAIRPYKSLGHVVDKE-LIASQLRKLVVVKLNGGLGTSMGCKGPKSVISVRNDLT 152

  Fly   149 FLDLTVQQIEHLNKTYDANVPLVLMNSFNTDEDTEKIVRKYKGFRVQIHTFNQSCFPRISREHYL 213
            |||||:|||:.|||||..:|||||||||||:|||:|:::||...:|.:|||:||.:|||:||..|
 Worm   153 FLDLTMQQIQTLNKTYGVDVPLVLMNSFNTNEDTQKVLKKYANVKVSVHTFSQSQYPRINRETLL 217

  Fly   214 PVAKDFDVEKDMEAWYPPGHGDFYDTFRNSGLLKKFIEEGREYCFLSNIDNLGATVDLNILNKLV 278
            |:.|..:.: |.|.|||||||:||:.|.|||||.||:.:|:||||||||||:||||||:|||.::
 Worm   218 PIVKSLEAD-DNECWYPPGHGNFYEAFHNSGLLDKFLADGKEYCFLSNIDNMGATVDLSILNFVL 281

  Fly   279 GEERATTPVEFVMEVTDKTRADVKGGTLIQMENKLRLLEIAQVPPEHVDDFKSVKTFKFFNTNNI 343
            ......|..||:||||||||||||||||||.|.:|.||||||||.::||:|||:..|:.|||||:
 Worm   282 NPSPDQTAPEFLMEVTDKTRADVKGGTLIQYEGRLMLLEIAQVPKDYVDEFKSISKFRIFNTNNL 346

  Fly   344 WANLAAIDRVLRERTLNMEIIVNNKTLENGTRVIQLETAVGAAMKCFDGAIGINVPRSRFLPVKK 408
            ||.|.|:.:::.|..|.||:|||.|.|:.|..|||||||.|||:|.|.||:|:||||||||||||
 Worm   347 WAKLDAMRKIVVENKLEMEVIVNPKHLDRGLDVIQLETAAGAAIKSFSGAVGVNVPRSRFLPVKK 411

  Fly   409 SSDLLLVMSNLYTLKNGSLVMSPQRMFPTTPLVKLGENHFSKVKEFLGRFANIPDIIELDHLTVS 473
            :|||||:|||||.:.||||.:|.||.||||||||||.: |.|||::||||..|||::||||||||
 Worm   412 TSDLLLLMSNLYDIDNGSLTLSHQRSFPTTPLVKLGSS-FDKVKDYLGRFNGIPDLLELDHLTVS 475

  Fly   474 GDVTFGRGVSLRGTVIIIANHGDRIDIPAGAILENKIVSGNMRILDH 520
            |||.||:.|||:||||||||||||||||.|:||||||||||:|||:|
 Worm   476 GDVWFGKDVSLKGTVIIIANHGDRIDIPPGSILENKIVSGNLRILEH 522

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
UGPNP_648300.3 UDPGP 68..485 CDD:396322 264/416 (63%)
rml-1NP_499842.1 UDPGP 73..487 CDD:279967 264/417 (63%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C160164063
Domainoid 1 1.000 533 1.000 Domainoid score I136
eggNOG 00.000 Not matched by this tool.
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 609 1.000 Inparanoid score I496
Isobase 00.000 Not matched by this tool.
OMA 1 1.010 - - QHG62878
OrthoDB 1 1.010 - - D314629at33208
OrthoFinder 1 1.000 - - FOG0002950
OrthoInspector 1 1.000 - - oto20540
orthoMCL 1 0.900 - - OOG6_102276
Panther 1 1.100 - - LDO PTHR43511
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R1599
SonicParanoid 1 1.000 - - X1950
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
1312.940

Return to query results.
Submit another query.