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Protein Alignment PGRP-LF and Pglyrp1
DIOPT Version :9
Sequence 1: | NP_648299.3 |
Gene: | PGRP-LF / 39064 |
FlyBaseID: | FBgn0035977 |
Length: | 369 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_445825.1 |
Gene: | Pglyrp1 / 84387 |
RGDID: | 621429 |
Length: | 183 |
Species: | Rattus norvegicus |
Alignment Length: | 164 |
Identity: | 61/164 - (37%) |
Similarity: | 92/164 - (56%) |
Gaps: | 2/164 - (1%) |
- Green bases have known domain annotations that are detailed below.
Fly 59 ILDRSEWLGEPPSGKYPHLKLPVSNIIIHHTATEGCEQEDVCIYRMKTIQAFHMKSFGWVDIGYN 123
::.||||.. .||.....||.||..::|.|||...|...|.|..:.:.:|.:.||..||.|:.||
Rat 21 VVPRSEWKA-LPSECSKGLKKPVRYVVISHTAGSFCSSPDSCEQQARNVQLYQMKQLGWCDVAYN 84
Fly 124 FLVGGDGQIYVGRGWHIQGQHVNG-YGAISVSIAFIGTFVNMEPPARQIEAAKRLMDEGVRLHRL 187
||:|.||.:|.||||.|:|.|... :..:|:.|.|:|.:.:..|..|.:.||..|:..||....|
Rat 85 FLIGEDGHVYEGRGWTIKGDHTGPIWNPMSIGITFMGDYSHRVPAKRALRAALNLLKCGVSEGFL 149
Fly 188 QPDYHIYAHRQLSPTESPGQKLFELMQNWPRFTQ 221
:.:|.:..||.:..|.|||.:|:|::|:|..:.:
Rat 150 RSNYEVKGHRDVQSTLSPGDQLYEIIQSWDHYRE 183
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
PGRP-LF | NP_648299.3 |
PGRP |
57..199 |
CDD:128941 |
53/140 (38%) |
PGRP |
236..363 |
CDD:295442 |
|
Pglyrp1 | NP_445825.1 |
PGRP |
21..161 |
CDD:128941 |
53/140 (38%) |
Blue background indicates that the domain is not in
the aligned region.
|
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
1 |
0.930 |
- |
- |
|
C166345821 |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG5479 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
1 |
1.010 |
- |
- |
|
D1110472at2759 |
OrthoFinder |
1 |
1.000 |
- |
- |
|
FOG0000842 |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
1 |
1.000 |
- |
- |
|
|
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
6 | 5.750 |
|
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