DRSC/TRiP Functional Genomics Resources

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Protein Alignment PGRP-LF and pglyrp6

DIOPT Version :10

Sequence 1:NP_648299.3 Gene:PGRP-LF / 39064 FlyBaseID:FBgn0035977 Length:369 Species:Drosophila melanogaster
Sequence 2:NP_001038687.2 Gene:pglyrp6 / 571817 ZFINID:ZDB-GENE-071227-2 Length:498 Species:Danio rerio


Alignment Length:178 Identity:62/178 - (34%)
Similarity:89/178 - (50%) Gaps:23/178 - (12%)


- Green bases have known domain annotations that are detailed below.


  Fly    53 PNKGLHILDRSEWLGEPPSGKYPHLKLPVSNIIIHHT--ATEGCEQEDVCIYRMKTIQAFHMKSF 115
            ||    |:.||:|......|...:|.|||..:.||||  .::.|...:.|...|:::|.:|.:|.
Zfish   328 PN----IITRSQWGAASYIGSPSYLSLPVRYLFIHHTYQPSKPCTTFEQCAAEMRSMQRYHQQSN 388

  Fly   116 GWVDIGYNFLVGGDGQIYVGRGWHIQGQHVNGYGAISVSIAFIGTFVNMEPPARQIEAAKRLMDE 180
            ||.||||:|:.|.||.:|.||||:..|.|..||.:|...:.|||.:.:..|.:..:..       
Zfish   389 GWSDIGYSFVAGSDGNLYEGRGWNWVGAHTYGYNSIGYGVCFIGDYTSTLPASSAMNM------- 446

  Fly   181 GVRLH---------RLQPDYHIYAHRQLSPTESPGQKLFELMQNWPRF 219
             ||..         ||...|.:|.|||.:.||.||..|:..:|.|.|:
Zfish   447 -VRYDFTYCATNGGRLSKSYSLYGHRQAAATECPGNTLYRQIQTWERY 493

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PGRP-LFNP_648299.3 PGRP 57..199 CDD:128941 51/152 (34%)
PGRP 236..363 CDD:470657
pglyrp6NP_001038687.2 PGRP 328..472 CDD:128941 52/155 (34%)
Blue background indicates that the domain is not in the aligned region.

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