DRSC/TRiP Functional Genomics Resources

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Protein Alignment PGRP-LF and PGRP-LA

DIOPT Version :10

Sequence 1:NP_648299.3 Gene:PGRP-LF / 39064 FlyBaseID:FBgn0035977 Length:369 Species:Drosophila melanogaster
Sequence 2:NP_996026.1 Gene:PGRP-LA / 39062 FlyBaseID:FBgn0035975 Length:368 Species:Drosophila melanogaster


Alignment Length:220 Identity:60/220 - (27%)
Similarity:99/220 - (45%) Gaps:37/220 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 VILLMVVGLAAGYFMWMMSFSTHSP----NKGLH------------------ILDRSEWLGEPPS 71
            :|.|:::.||.|..:..:..:...|    ||.::                  ::||.:|    .:
  Fly   131 LITLILLVLATGLIVLYVELNRPKPELPSNKAIYFGNNYDHQTFPNLGNGHLVVDREQW----GA 191

  Fly    72 GKYPH-----LKLPVSNIIIHHTATEG--CEQEDVCIYRMKTIQAFHMKSFGWVDIGYNFLVGGD 129
            .|..|     ||.|:..::|.|...:.  |:....|..:|:|||...:...|..||..||.|..:
  Fly   192 SKNSHGLTIPLKRPIPYVLITHIGVQSLPCDNIYKCSIKMRTIQDSAIAEKGLPDIQSNFYVSEE 256

  Fly   130 GQIYVGRGWHIQGQHVNGYGAISVSIAFIGTFVNMEPPARQIEAAKRLMDEGVRLHRLQPDYHIY 194
            |.|||||||    ...|.|...:::|.|:|.:...:|..:|:|..:.|:...|....:..||.:.
  Fly   257 GNIYVGRGW----DWANTYANQTLAITFMGDYGRFKPGPKQLEGVQFLLAHAVANRNIDVDYKLV 317

  Fly   195 AHRQLSPTESPGQKLFELMQNWPRF 219
            |..|...|.|||..:::.::|||.|
  Fly   318 AQNQTKVTRSPGAYVYQEIRNWPHF 342

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PGRP-LFNP_648299.3 PGRP 57..199 CDD:128941 43/166 (26%)
PGRP 236..363 CDD:470657
PGRP-LANP_996026.1 PGRP 181..322 CDD:128941 43/148 (29%)
Blue background indicates that the domain is not in the aligned region.

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