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Protein Alignment PGRP-LC and pglyrp1
DIOPT Version :9
Sequence 1: | NP_001246693.1 |
Gene: | PGRP-LC / 39063 |
FlyBaseID: | FBgn0035976 |
Length: | 520 |
Species: | Drosophila melanogaster |
Sequence 2: | XP_012823786.1 |
Gene: | pglyrp1 / 548492 |
XenbaseID: | XB-GENE-491319 |
Length: | 214 |
Species: | Xenopus tropicalis |
Alignment Length: | 141 |
Identity: | 47/141 - (33%) |
Similarity: | 74/141 - (52%) |
Gaps: | 4/141 - (2%) |
- Green bases have known domain annotations that are detailed below.
Fly 376 PVGLVIALPTNSENCSTQAICVLRVRLLQTYDIESSQKCDIAYNFLIGGDGNVYVGRGWNKMGAH 440
||..||...|...:||:|..|:.:.:.:|.|.:.|:..||:.|:||:|.|||||.|||||.:|||
Frog 73 PVPYVIIHHTAGAHCSSQTSCISQAKSIQNYHMNSNAWCDVGYSFLVGEDGNVYEGRGWNSVGAH 137
Fly 441 MNNINYDSQSLSFAYIGSFKTIQPSAKQLSVTRLLLERGVKLGKIAPSYRFTASSKLMPSVTDFK 505
.. ||:|.|:..:.:|::..|.|:....:..:.|:..||..|.|..:|.......: ..|:..
Frog 138 AP--NYNSNSIGISVMGTYTNINPNTAAQNAVKNLISCGVTKGYIKSTYILKGHRNV--GSTECP 198
Fly 506 ADALYASFANW 516
.:..|.:...|
Frog 199 GNTFYNTVKTW 209
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
PGRP-LC | NP_001246693.1 |
PGRP |
356..490 |
CDD:128941 |
43/113 (38%) |
pglyrp1 | XP_012823786.1 |
PGRP |
51..192 |
CDD:128941 |
44/120 (37%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
1 |
1.010 |
- |
- |
|
D1110472at2759 |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
0 | 0.000 |
Not matched by this tool. |
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
0 | 0.000 |
Not matched by this tool. |
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
1 | 1.010 |
|
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