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Protein Alignment PGRP-LC and Pglyrp3
DIOPT Version :9
Sequence 1: | NP_001246693.1 |
Gene: | PGRP-LC / 39063 |
FlyBaseID: | FBgn0035976 |
Length: | 520 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_001178890.1 |
Gene: | Pglyrp3 / 499658 |
RGDID: | 1593164 |
Length: | 339 |
Species: | Rattus norvegicus |
Alignment Length: | 164 |
Identity: | 51/164 - (31%) |
Similarity: | 83/164 - (50%) |
Gaps: | 6/164 - (3%) |
- Green bases have known domain annotations that are detailed below.
Fly 356 VERQQWLAQPPQKEIPDLELPVGLVIALPTNSENCSTQAICVLRVRLLQTYDIESSQKCDIAYNF 420
:.|..|.|: :.....:.||...||.:.|..|:|:..|.|::|||..|::.::....|||||:|
Rat 180 IPRTAWEAR--ETHCSQMNLPAKFVIIIHTAGESCNESADCLIRVRDTQSFHMDKQDFCDIAYHF 242
Fly 421 LIGGDGNVYVGRGWNKMGAHMNNINYDSQSLSFAYIGSFKTIQPSAKQLSVTRLLLERGVKLGKI 485
|:|.||.||.|.||...|:| ...|:..:|..|::|:|....|:...|...:.|::..|.:|.:
Rat 243 LVGQDGVVYEGVGWTIEGSH--TYGYNDIALGIAFMGNFVEKPPNEASLEAAQSLIQCAVAMGYL 305
Fly 486 APSYRFTASSKLMPSVTDFKADALYASFANWTHW 519
|.:|.....|.:...:: ...|||.....|.|:
Rat 306 ASNYLLMGHSDVSNILS--PGQALYNIIKTWPHF 337
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
PGRP-LC | NP_001246693.1 |
PGRP |
356..490 |
CDD:128941 |
44/133 (33%) |
Pglyrp3 | NP_001178890.1 |
PGRP |
19..152 |
CDD:128941 |
|
PGRP |
177..317 |
CDD:128941 |
46/140 (33%) |
Blue background indicates that the domain is not in
the aligned region.
|
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG5479 |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
1 |
1.010 |
- |
- |
|
D1110472at2759 |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
0 | 0.000 |
Not matched by this tool. |
Phylome |
1 |
0.910 |
- |
- |
|
|
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
1 |
1.000 |
- |
- |
|
|
TreeFam |
1 |
0.960 |
- |
- |
|
|
|
5 | 4.780 |
|
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