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Protein Alignment PGRP-LC and PGRP-SC2
DIOPT Version :9
Sequence 1: | NP_001246693.1 |
Gene: | PGRP-LC / 39063 |
FlyBaseID: | FBgn0035976 |
Length: | 520 |
Species: | Drosophila melanogaster |
Sequence 2: | NP_610410.1 |
Gene: | PGRP-SC2 / 35862 |
FlyBaseID: | FBgn0043575 |
Length: | 184 |
Species: | Drosophila melanogaster |
Alignment Length: | 135 |
Identity: | 47/135 - (34%) |
Similarity: | 77/135 - (57%) |
Gaps: | 4/135 - (2%) |
- Green bases have known domain annotations that are detailed below.
Fly 385 TNSENCSTQAICVLRVRLLQTYDIESSQKCDIAYNFLIGGDGNVYVGRGWNKMGAHMNNINYDSQ 449
|....|||:|.|:.:::.:|.|.::|....||.||||||||||||.|||||.||||.. |::|:
Fly 52 TAGNYCSTKAACITQLQNIQAYHMDSLGWADIGYNFLIGGDGNVYEGRGWNVMGAHAT--NWNSK 114
Fly 450 SLSFAYIGSFKTIQPSAKQLSVTRLLLERGVKLGKIAPSYRFTASSKLMPSVTDFKADALYASFA 514
|:..:::|::.|...::.|::..:.||...|..|:|...|......:: ..|:.....::....
Fly 115 SIGISFLGNYNTNTLTSAQITAAKGLLSDAVSRGQIVSGYILYGHRQV--GSTECPGTNIWNEIR 177
Fly 515 NWTHW 519
.|::|
Fly 178 TWSNW 182
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
PGRP-LC | NP_001246693.1 |
PGRP |
356..490 |
CDD:128941 |
43/104 (41%) |
PGRP-SC2 | NP_610410.1 |
PGRP |
21..162 |
CDD:128941 |
44/111 (40%) |
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
1 |
0.900 |
- |
- |
|
E1_COG5479 |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
Isobase |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
1 |
1.010 |
- |
- |
|
D1110472at2759 |
OrthoFinder |
1 |
1.000 |
- |
- |
|
FOG0000842 |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
1 |
1.100 |
- |
- |
P |
PTHR11022 |
Phylome |
1 |
0.910 |
- |
- |
|
|
RoundUp |
0 | 0.000 |
Not matched by this tool. |
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
|
5 | 4.920 |
|
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