DRSC/TRiP Functional Genomics Resources

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Protein Alignment PGRP-LC and Pglyrp3

DIOPT Version :10

Sequence 1:NP_648298.1 Gene:PGRP-LC / 39063 FlyBaseID:FBgn0035976 Length:520 Species:Drosophila melanogaster
Sequence 2:XP_006501534.1 Gene:Pglyrp3 / 242100 MGIID:2685266 Length:359 Species:Mus musculus


Alignment Length:162 Identity:52/162 - (32%)
Similarity:83/162 - (51%) Gaps:6/162 - (3%)


- Green bases have known domain annotations that are detailed below.


  Fly   358 RQQWLAQPPQKEIPDLELPVGLVIALPTNSENCSTQAICVLRVRLLQTYDIESSQKCDIAYNFLI 422
            |..|.|:  :...|.:.||...||.:.|..::|:..|.|::|||..|::.|::...|||||:||:
Mouse   202 RSAWEAR--ETHCPQMNLPAKFVIIIHTAGKSCNESADCLVRVRDTQSFHIDNQDFCDIAYHFLV 264

  Fly   423 GGDGNVYVGRGWNKMGAHMNNINYDSQSLSFAYIGSFKTIQPSAKQLSVTRLLLERGVKLGKIAP 487
            |.||.||.|.|||..|:|  ...|:..:|..|::|:|....|:...|...:.|::..|..|.:..
Mouse   265 GQDGEVYEGVGWNIEGSH--TYGYNDIALGIAFMGNFVEKPPNEASLKAAQSLIQCAVAKGYLTS 327

  Fly   488 SYRFTASSKLMPSVTDFKADALYASFANWTHW 519
            :|.....|.:...::  ...|||.....|.|:
Mouse   328 NYLLMGHSDVSNILS--PGQALYNIIKTWPHF 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PGRP-LCNP_648298.1 PGRP 356..490 CDD:128941 45/131 (34%)
Pglyrp3XP_006501534.1 PGRP 40..172 CDD:128941
PGRP 197..337 CDD:128941 47/138 (34%)
Blue background indicates that the domain is not in the aligned region.

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