DRSC/TRiP Functional Genomics Resources

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Protein Alignment PGRP-LA and PGLYRP4

DIOPT Version :10

Sequence 1:NP_996026.1 Gene:PGRP-LA / 39062 FlyBaseID:FBgn0035975 Length:368 Species:Drosophila melanogaster
Sequence 2:NP_065126.2 Gene:PGLYRP4 / 57115 HGNCID:30015 Length:373 Species:Homo sapiens


Alignment Length:227 Identity:65/227 - (28%)
Similarity:89/227 - (39%) Gaps:55/227 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   164 YFGNNYDHQTFP-------NL-----GNGHL------------------------------VVDR 186
            :||....|...|       ||     ..|||                              ||.|
Human   152 FFGTKKGHSPSPAALSAMENLITYAVQKGHLSSSYVQPLLGKGENCLAPRQKTSLKKACPGVVPR 216

  Fly   187 EQWGASKNSH--GLTIPLKRPIPYVLITHIGVQSLPCDNIYKCSIKMRTIQDSAIAEKGLPDIQS 249
            ..||| :.:|  .:|:|.|    |.:|.|...::  |:...:|.:.:|.||...|......||..
Human   217 SVWGA-RETHCPRMTLPAK----YGIIIHTAGRT--CNISDECRLLVRDIQSFYIDRLKSCDIGY 274

  Fly   250 NFYVSEEGNIYVGRGWDWANT----YANQTLAITFMGDYGRFKPGPKQLEGVQFLLAHAVANRNI 310
            ||.|.::|.||.|.||:...:    |.:..|.|||||.:....|....||..|.|:..|:....:
Human   275 NFLVGQDGAIYEGVGWNVQGSSTPGYDDIALGITFMGTFTGIPPNAAALEAAQDLIQCAMVKGYL 339

  Fly   311 DVDYKLVAQNQTKVTRSPGAYVYQEIRNWPHF 342
            ..:|.||..:....|.|||..:|..|..||||
Human   340 TPNYLLVGHSDVARTLSPGQALYNIISTWPHF 371

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 592.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
PGRP-LANP_996026.1 PGRP 181..322 CDD:128941 48/176 (27%)
PGLYRP4NP_065126.2 PGRP 53..194 CDD:128941 9/41 (22%)
PGRP 211..351 CDD:128941 46/146 (32%)
Interaction with murein 293..302 1/8 (13%)