DRSC/TRiP Functional Genomics Resources

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Protein Alignment PGRP-LA and pglyrp2

DIOPT Version :9

Sequence 1:NP_996026.1 Gene:PGRP-LA / 39062 FlyBaseID:FBgn0035975 Length:368 Species:Drosophila melanogaster
Sequence 2:NP_001038631.1 Gene:pglyrp2 / 568634 ZFINID:ZDB-GENE-071227-1 Length:458 Species:Danio rerio


Alignment Length:166 Identity:55/166 - (33%)
Similarity:80/166 - (48%) Gaps:7/166 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly   183 VVDREQWGASKNSHGLTIPLKRPIPYVLITHIGVQSLPCDNIYKCSIKMRTIQDSAIAEKGLPDI 247
            ::.|..|||:.....|.: |..|:.::.|.|..:.|.||.|:..||..||.:|.....:.|..||
Zfish   287 IIPRCIWGAAPPQVPLEL-LSPPMSFLYIHHTAIPSKPCLNLQTCSQNMRAMQRFHQKDWGWYDI 350

  Fly   248 QSNFYVSEEGNIYVGRGW--DWANTYA--NQTLAITFMGDYGRFKPGPKQLEGVQ-FLLAHAVAN 307
            ..:|.|..:|.||.||||  ..|:|..  |....:.|:|||....|....:|.|: .|:...|.|
Zfish   351 GYSFVVGSDGYIYEGRGWMSQGAHTKGRNNVGYGVAFIGDYSGRLPSTHDMELVRHHLVKCGVNN 415

  Fly   308 RNIDVDYKLVAQNQTKVTRS-PGAYVYQEIRNWPHF 342
            ..:..|:.::...|..||.| ||..:|.||..|.|:
Zfish   416 GFLQEDFTILGHRQVVVTTSCPGNALYSEITTWMHY 451

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PGRP-LANP_996026.1 PGRP 181..322 CDD:128941 44/143 (31%)
pglyrp2NP_001038631.1 PGRP 285..430 CDD:128941 44/143 (31%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1110472at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11022
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
43.980

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