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Protein Alignment PGRP-LA and Pglyrp4
DIOPT Version :9
Sequence 1: | NP_996026.1 |
Gene: | PGRP-LA / 39062 |
FlyBaseID: | FBgn0035975 |
Length: | 368 |
Species: | Drosophila melanogaster |
Sequence 2: | XP_038958226.1 |
Gene: | Pglyrp4 / 310611 |
RGDID: | 1308520 |
Length: | 384 |
Species: | Rattus norvegicus |
Alignment Length: | 166 |
Identity: | 50/166 - (30%) |
Similarity: | 79/166 - (47%) |
Gaps: | 13/166 - (7%) |
- Green bases have known domain annotations that are detailed below.
Fly 183 VVDREQWGASKNSH--GLTIPLKRPIPYVLITHIGVQSLPCDNIYKCSIKMRTIQDSAIAEKGLP 245
:|.|..||| :.|| .:|:|.| |.:|.|...:: |....:|.:.::.:|...:......
Rat 224 IVPRSAWGA-RESHCFKMTLPAK----YAIILHTAGRT--CSQPDECRLLIQDLQSFFMDRLNAC 281
Fly 246 DIQSNFYVSEEGNIYVGRGWD----WANTYANQTLAITFMGDYGRFKPGPKQLEGVQFLLAHAVA 306
||..||.|.::|.:|.|.||: ..:.|.:..|:|.|||.:....|....|:..|.|:..||.
Rat 282 DIGYNFLVGQDGGVYEGVGWNNQGSKTDGYNDIALSIAFMGIFTGSSPNAAALQAAQDLIQCAVV 346
Fly 307 NRNIDVDYKLVAQNQTKVTRSPGAYVYQEIRNWPHF 342
...:..:|.|:..:....|.|||..:|..|:.||||
Rat 347 KGYLTPNYLLMGHSDVSNTLSPGQALYNIIKTWPHF 382
|
Known Domains:
Indicated by green bases in alignment.
Gene | Sequence | Domain | Region |
External ID | Identity |
PGRP-LA | NP_996026.1 |
PGRP |
181..322 |
CDD:128941 |
40/144 (28%) |
Pglyrp4 | XP_038958226.1 |
PGRP |
67..201 |
CDD:128941 |
|
PGRP |
222..362 |
CDD:128941 |
40/144 (28%) |
Blue background indicates that the domain is not in
the aligned region.
|
Information from Original Tools:
Tool |
Simple Score |
Weighted Score |
Original Tool Information |
BLAST Result |
Score |
Score Type |
Cluster ID |
Compara |
0 | 0.000 |
Not matched by this tool. |
Domainoid |
0 | 0.000 |
Not matched by this tool. |
eggNOG |
0 | 0.000 |
Not matched by this tool. |
Hieranoid |
0 | 0.000 |
Not matched by this tool. |
Homologene |
0 | 0.000 |
Not matched by this tool. |
Inparanoid |
0 | 0.000 |
Not matched by this tool. |
OMA |
0 | 0.000 |
Not matched by this tool. |
OrthoDB |
1 |
1.010 |
- |
- |
|
D1110472at2759 |
OrthoFinder |
0 | 0.000 |
Not matched by this tool. |
OrthoInspector |
0 | 0.000 |
Not matched by this tool. |
orthoMCL |
0 | 0.000 |
Not matched by this tool. |
Panther |
1 |
1.100 |
- |
- |
O |
PTHR11022 |
Phylome |
1 |
0.910 |
- |
- |
|
|
SonicParanoid |
0 | 0.000 |
Not matched by this tool. |
SwiftOrtho |
1 |
1.000 |
- |
- |
|
|
TreeFam |
0 | 0.000 |
Not matched by this tool. |
|
4 | 4.020 |
|
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