DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PGRP-LA and Pglyrp3

DIOPT Version :10

Sequence 1:NP_996026.1 Gene:PGRP-LA / 39062 FlyBaseID:FBgn0035975 Length:368 Species:Drosophila melanogaster
Sequence 2:XP_006501534.1 Gene:Pglyrp3 / 242100 MGIID:2685266 Length:359 Species:Mus musculus


Alignment Length:174 Identity:51/174 - (29%)
Similarity:82/174 - (47%) Gaps:19/174 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   175 PNLGNGHLVVDREQWGASKNSH--GLTIPLKRPIPYVLITHIGVQSLPCDNIYKCSIKMRTIQDS 237
            ||      :..|..|.| :.:|  .:.:|.|    :|:|.|...:|  |:....|.:::|..|..
Mouse   197 PN------ITPRSAWEA-RETHCPQMNLPAK----FVIIIHTAGKS--CNESADCLVRVRDTQSF 248

  Fly   238 AIAEKGLPDIQSNFYVSEEGNIYVGRGW--DWANTYANQTLA--ITFMGDYGRFKPGPKQLEGVQ 298
            .|..:...||..:|.|.::|.:|.|.||  :.::||....:|  |.|||::....|....|:..|
Mouse   249 HIDNQDFCDIAYHFLVGQDGEVYEGVGWNIEGSHTYGYNDIALGIAFMGNFVEKPPNEASLKAAQ 313

  Fly   299 FLLAHAVANRNIDVDYKLVAQNQTKVTRSPGAYVYQEIRNWPHF 342
            .|:..|||...:..:|.|:..:......|||..:|..|:.||||
Mouse   314 SLIQCAVAKGYLTSNYLLMGHSDVSNILSPGQALYNIIKTWPHF 357

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PGRP-LANP_996026.1 PGRP 181..322 CDD:128941 40/146 (27%)
Pglyrp3XP_006501534.1 PGRP 40..172 CDD:128941
PGRP 197..337 CDD:128941 42/152 (28%)
Blue background indicates that the domain is not in the aligned region.

Return to query results.
Submit another query.