DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment PGRP-LA and PGLYRP3

DIOPT Version :9

Sequence 1:NP_996026.1 Gene:PGRP-LA / 39062 FlyBaseID:FBgn0035975 Length:368 Species:Drosophila melanogaster
Sequence 2:XP_011507420.1 Gene:PGLYRP3 / 114771 HGNCID:30014 Length:377 Species:Homo sapiens


Alignment Length:174 Identity:51/174 - (29%)
Similarity:76/174 - (43%) Gaps:19/174 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly   175 PNLGNGHLVVDREQWGASKNSH--GLTIPLKRPIPYVLITHIGVQSLPCDNIYKCSIKMRTIQDS 237
            ||      ::.|..|.| :.:|  .:.:|.|    ||:|.|....|  |.....|...:|.||..
Human   215 PN------IIKRSAWEA-RETHCPKMNLPAK----YVIIIHTAGTS--CTVSTDCQTVVRNIQSF 266

  Fly   238 AIAEKGLPDIQSNFYVSEEGNIYVGRGW--DWANTYA--NQTLAITFMGDYGRFKPGPKQLEGVQ 298
            .:..:...||..:|.|.::|.:|.|.||  ..::||.  :..|.|.|:|.:....|....||..|
Human   267 HMDTRNFCDIGYHFLVGQDGGVYEGVGWHIQGSHTYGFNDIALGIAFIGYFVEKPPNAAALEAAQ 331

  Fly   299 FLLAHAVANRNIDVDYKLVAQNQTKVTRSPGAYVYQEIRNWPHF 342
            .|:..||....:..:|.|:..:......|||..:|..|..||||
Human   332 DLIQCAVVEGYLTPNYLLMGHSDVVNILSPGQALYNIISTWPHF 375

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
PGRP-LANP_996026.1 PGRP 181..322 CDD:128941 40/146 (27%)
PGLYRP3XP_011507420.1 PGRP 57..195 CDD:128941
PGRP 215..355 CDD:128941 42/152 (28%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D1110472at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11022
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
33.020

Return to query results.
Submit another query.