DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4476 and Slc6a1

DIOPT Version :9

Sequence 1:NP_648293.1 Gene:CG4476 / 39056 FlyBaseID:FBgn0035969 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_077347.1 Gene:Slc6a1 / 79212 RGDID:620533 Length:599 Species:Rattus norvegicus


Alignment Length:599 Identity:205/599 - (34%)
Similarity:341/599 - (56%) Gaps:32/599 - (5%)


- Green bases have known domain annotations that are detailed below.


  Fly    10 VSGGLPKLETSRCAGSGEALLKPSLLPMALESSELSPDRKARDNWGSSLEFLMSCIALSVGLGNV 74
            |:.|....|.|....:.:   ||..|.:.::..  :.|...||.|....:|||||:..::|||||
  Rat     8 VADGQISTEVSEAPVASD---KPKTLVVKVQKK--AGDLPDRDTWKGRFDFLMSCVGYAIGLGNV 67

  Fly    75 WRFPFTALENGGGAFLIPYLVVLFVVGKPIYYMEMLLGQFSSRGIVQVFDFAPLMRGVGYAQLLA 139
            ||||:...:||||||||||.:.|...|.|::.:|..|||::|.|.:.|:..||:.:|||.|..:.
  Rat    68 WRFPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQYTSIGGLGVWKLAPMFKGVGLAAAVL 132

  Fly   140 LGVLATYYASVMALTLRYFFDSFASELPWSFCREEWG-DGCVSASGGQPLQGQLSRNFSSSTQLY 203
            ...|..||..:::..:.|.::||.:.|||..|...|. |.|.|   ...|..  :.|.:|:...:
  Rat   133 SFWLNIYYIVIISWAIYYLYNSFTTTLPWKQCDNPWNTDRCFS---NYSLVN--TTNMTSAVVEF 192

  Fly   204 LQRIVLNETDSLEE--GIGYPSGSLALMLGISWLTVTLIIIRGVKSSGKAAYVLALFPYVVMFIL 266
            .:|.:...||.|::  .|.:|   ||:.|.|:|:.|...|.:||..:||..|..|.:||:::.||
  Rat   193 WERNMHQMTDGLDKPGQIRWP---LAITLAIAWVLVYFCIWKGVGWTGKVVYFSATYPYIMLIIL 254

  Fly   267 LVRALTLPGAYDGVMYFLTPQWEKLLEPQVWYNAVTQVFFSLAVCFGVIIMYSSYNRFGHNVYRD 331
            ..|.:|||||.:|:::::||.:.||.:.:||.:|.||:|||..:..|.:|...|||.|.:|||||
  Rat   255 FFRGVTLPGAKEGILFYITPNFRKLSDSEVWLDAATQIFFSYGLGLGSLIALGSYNSFHNNVYRD 319

  Fly   332 ANIVTTLDTFTSLLSGVIIFGILGNLAHESGTKDIASVVKAGPGLAFISYPDAIAKFKMFPQVFS 396
            :.||..:::.||:.:|.:||.|:|.:||.: .:.||.|..:||||||::||:|:.:..:.| :::
  Rat   320 SIIVCCINSCTSMFAGFVIFSIVGFMAHVT-KRSIADVAASGPGLAFLAYPEAVTQLPISP-LWA 382

  Fly   397 LLFFAMLFMLGVGSNVGMVSCIMTVLKDQFVNV---KLWIIVVSLSVIGFLVGLIYITPGGQHII 458
            :|||:||.|||:.|....|...:|.|.|::..:   :..:.:.::.::.:|:||..||.||.::.
  Rat   383 ILFFSMLLMLGIDSQFCTVEGFITALVDEYPRLLRNRRELFIAAVCIVSYLIGLSNITQGGIYVF 447

  Fly   459 TLMDFHGVTFVSLVSAI-FELIAVGWIYGTKRLCQDAEYMLNIKTSNYYRICWSIVTPLVMLVIL 522
            .|.|::..:.:||:..: ||.:::.|.||..|...:.:.|:..:...::::|||..||:::..:.
  Rat   448 KLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIQEMVGSRPCIWWKLCWSFFTPIIVAGVF 512

  Fly   523 VYSLLTMRPLSYNGQEFPLVYRVVGWCVSGCIIGQLFYWAGYA--NFKQPKGSLKSRINNSIKPH 585
            ::|.:.|.||:.....||...:.|||.::   :..:....||.  .|...|||||.|:...|:|.
  Rat   513 LFSAVQMTPLTMGSYVFPKWGQGVGWLMA---LSSMVLIPGYMAYMFLTLKGSLKQRLQVMIQPS 574

  Fly   586 SDW-----GPSDPK 594
            .|.     ||..|:
  Rat   575 EDIVRPENGPEQPQ 588

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4476NP_648293.1 SLC6sbd 52..526 CDD:271359 172/480 (36%)
Slc6a1NP_077347.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..23 4/14 (29%)
SLC6sbd_GAT1 2..599 CDD:212075 205/599 (34%)
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 577..599 3/12 (25%)
PDZ-binding 597..599
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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