DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4476 and slc6a4b

DIOPT Version :9

Sequence 1:NP_648293.1 Gene:CG4476 / 39056 FlyBaseID:FBgn0035969 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_001170930.1 Gene:slc6a4b / 664770 ZFINID:ZDB-GENE-060314-2 Length:591 Species:Danio rerio


Alignment Length:561 Identity:202/561 - (36%)
Similarity:319/561 - (56%) Gaps:35/561 - (6%)


- Green bases have known domain annotations that are detailed below.


  Fly    49 KARDNWGSSLEFLMSCIALSVGLGNVWRFPFTALENGGGAFLIPYLVVLFVVGKPIYYMEMLLGQ 113
            ::||.|...::||:|.|..:|.||||||||:...:||||||||||:::....|.|::|||:.|||
Zfish    36 ESRDKWSKKMDFLLSVIGFAVDLGNVWRFPYICYQNGGGAFLIPYVLMAVFGGVPLFYMELALGQ 100

  Fly   114 FSSRGIVQVF-DFAPLMRGVGYAQLLALGVLATYYASVMALTLRYFFDSFASELPWSFCREEWG- 176
            |...|.:.:: ...|:.:|:|:|..:....::.||.:::|..|.||:.||:|.|||:.|..:|. 
Zfish   101 FHRTGAISIWKHICPIFKGIGFAICIIALYVSFYYNTIIAWALFYFYSSFSSTLPWTSCDNDWNT 165

  Fly   177 DGCVSASGGQPLQGQLSRNFSSS--TQLYLQRIVLNETDSLEEGIGYPSGSLALMLGISWLTVTL 239
            :.|.:..|...:..   .|:|.|  .:.|.:.::.....|....:||....|.|.|.:.:..|..
Zfish   166 ENCTNYFGKDNVTW---TNYSRSPAEEFYTRNVLAVHESSGLGNVGYIRWQLMLCLFLIFTIVYF 227

  Fly   240 IIIRGVKSSGKAAYVLALFPYVVMFILLVRALTLPGAYDGVMYFLTPQWEKLLEPQVWYNAVTQV 304
            .:.:|||:|||..:|.|..||||:.||::|..|||||:.||:::|.|:||||.|..||.:|..|:
Zfish   228 SLWKGVKTSGKVVWVTATLPYVVLLILMIRGATLPGAWKGVVFYLNPKWEKLKETSVWVDAAAQI 292

  Fly   305 FFSLAVCFGVIIMYSSYNRFGHNVYRDANIVTTLDTFTSLLSGVIIFGILGNLAHES--GTKDIA 367
            ||||...|||::..||||.|.:|.||||.:.:.::..||.:||.:||.:||.:|.:.  ..:|:|
Zfish   293 FFSLGPGFGVLLALSSYNPFTNNCYRDAIVTSLVNCLTSFVSGFVIFTVLGYMAEQRNVNVEDVA 357

  Fly   368 SVVKAGPGLAFISYPDAIAKFKMFPQVFSLLFFAMLFMLGVGSNVGMVSCIMTVLKDQFVNV--- 429
            .  ..||.|.||:||:|||.. :....|:::||.|:..||:.|..|.:..|:|.:.|::.:|   
Zfish   358 R--DKGPSLLFITYPEAIANM-VGSTFFAIIFFVMMITLGLDSTFGGLEAIITAVMDEYPDVLSH 419

  Fly   430 KLWIIVVSLSVIGFLVGLIYITPGGQHIITLMDFHGVTFVSLVSAIF-ELIAVGWIYGTKRLCQD 493
            :..:.|:.|.|:.||..|..:|.||.:::.|::..||. .|:::.:| |..||.|.||..|...|
Zfish   420 RRELFVLGLVVVCFLGSLSTLTKGGAYVVKLLEEFGVG-SSIIAIVFLEATAVSWFYGINRFSND 483

  Fly   494 AEYMLNIKTSNYYRICWSIVTPLVMLVILVYSLLTMRPLSYNGQEFPLVYRVVGWCVS-GCIIG- 556
            .:.||......::::||..::|..:..|::.|||..:.|:....|||      .|.:: |.||| 
Zfish   484 IKSMLGYTPGLFWKVCWVAISPAFLAYIIISSLLNPQTLTLFDYEFP------DWSITVGYIIGA 542

  Fly   557 QLFYWAG-YANFK--QPKGSLKSRINNSIKP-------HSD 587
            ..|.|.. |..:|  ...||||.|:...::|       |:|
Zfish   543 SSFIWIPIYMVYKLVWTPGSLKQRLAVCLRPERTLPDIHTD 583

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4476NP_648293.1 SLC6sbd 52..526 CDD:271359 177/483 (37%)
slc6a4bNP_001170930.1 SLC6sbd_SERT 38..574 CDD:271399 199/548 (36%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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