DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4476 and slc6a8

DIOPT Version :9

Sequence 1:NP_648293.1 Gene:CG4476 / 39056 FlyBaseID:FBgn0035969 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_001314797.1 Gene:slc6a8 / 567544 ZFINID:ZDB-GENE-071024-2 Length:652 Species:Danio rerio


Alignment Length:586 Identity:221/586 - (37%)
Similarity:330/586 - (56%) Gaps:43/586 - (7%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 PMALESSELSPDRK------ARDNWGSSLEFLMSCIALSVGLGNVWRFPFTALENGGGAFLIPYL 94
            ||:..:..:|...|      .|:.|...::|:|||:..:||||||||||:...:||||.|||||:
Zfish    43 PMSAATGAISAVEKKREGYPERETWTRQMDFIMSCVGFAVGLGNVWRFPYLCYKNGGGVFLIPYV 107

  Fly    95 VVLFVVGKPIYYMEMLLGQFSSRGIVQVFDFAPLMRGVGYAQLLALGVLATYYASVMALTLRYFF 159
            :.:|:.|.||:::|:.||||...|.:.|::.|||.:|:|||.::.:....|||..|:|....||.
Zfish   108 LFIFLGGIPIFFLEIALGQFMKAGSINVWNIAPLFKGLGYASMVIVFFCNTYYIMVLAWGFYYFI 172

  Fly   160 DSFASELPWSFCREEW-----------GDGCVSASGGQPLQGQLS----RNFSSSTQLYLQRIVL 209
            .||.:.||||.|...|           || |.:.:.|....|.|:    .|..|....:.:..||
Zfish   173 KSFNATLPWSTCDNPWNTENCIEIFRQGD-CKNGTIGNSTFGNLTCEELANGRSPIIEFWENKVL 236

  Fly   210 NETDSLEEGIGYPSGSLALMLGISWLTVTLIIIRGVKSSGKAAYVLALFPYVVMFILLVRALTLP 274
            |.:|.|:|. |..:..|.|.|...|:.|...:.:||||:||..|..|.|||||:.|||||.:|||
Zfish   237 NISDGLDEP-GAVNWELMLCLLAVWVMVYFCVWKGVKSTGKIVYFTATFPYVVLIILLVRGVTLP 300

  Fly   275 GAYDGVMYFLTPQWEKLLEPQVWYNAVTQVFFSLAVCFGVIIMYSSYNRFGHNVYRDANIVTTLD 339
            |||||::|::.|.|.||.|.|||.:|.||:|||.|:..|.:....|||||.::.|:||.::..::
Zfish   301 GAYDGILYYVKPDWSKLGEAQVWIDAGTQIFFSYAIGLGALTALGSYNRFNNDCYKDAFVLALIN 365

  Fly   340 TFTSLLSGVIIFGILGNLAHESGTKDIASVVKAGPGLAFISYPDAIAKFKMFPQVFSLLFFAMLF 404
            :.||..:|.::|.|||.:|.|.|. ||:.|.::|||||||:||.|::...:.| |::.|||.||.
Zfish   366 SGTSFFAGFVVFSILGFMASEQGV-DISKVAESGPGLAFIAYPKAVSMMPVAP-VWAALFFIMLL 428

  Fly   405 MLGVGSNVGMVSCIMTVLKDQF-----VNVKLWIIVVSLSVIGFLVGLIYITPGGQHIITLMDFH 464
            :||:.|....|...:|.:.|.|     :..:..|.|....::.|::.|..:|.||.::..|.|::
Zfish   429 LLGLDSQFVGVEGFVTGILDLFPGKYYMRYQREIAVAICCLLCFIIDLSMVTQGGMYVFQLFDYY 493

  Fly   465 GVTFVSLV-SAIFELIAVGWIYGTKRLCQDAEYMLNIKTSNYYRICWSIVTPLVMLVILVYSLLT 528
            ..:.::|: .|.:|.:.|.|:||..|...|...|:..:...:.:.||||:||.|.:.|.::.||.
Zfish   494 SASGMTLLWQAFWECVVVAWVYGADRFMDDIARMIGYRPFPWMKWCWSIITPCVCMGIFLFHLLN 558

  Fly   529 MRPLSYNG-QEFPLVYRVVGWCVS----GCIIGQLFYWAGYANFKQPKGSLKSRINNSIKPHSDW 588
            .:||:||. ..:|....|:|||::    .||...|.|     .....||:.|.|..|..||  .|
Zfish   559 YKPLTYNNVYVYPWWGEVIGWCLALSSMLCIPVSLVY-----KLSGAKGTFKERWENLTKP--VW 616

  Fly   589 G 589
            |
Zfish   617 G 617

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4476NP_648293.1 SLC6sbd 52..526 CDD:271359 192/494 (39%)
slc6a8NP_001314797.1 SLC6sbd_CT1 64..652 CDD:271397 217/565 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.820

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