DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4476 and RGD1562492

DIOPT Version :9

Sequence 1:NP_648293.1 Gene:CG4476 / 39056 FlyBaseID:FBgn0035969 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_001102616.1 Gene:RGD1562492 / 499151 RGDID:1562492 Length:743 Species:Rattus norvegicus


Alignment Length:720 Identity:177/720 - (24%)
Similarity:296/720 - (41%) Gaps:171/720 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly    36 PMALESSELSP--DRKARD----NWG-----------------SSLEFLMSCIALSVGLGNVWRF 77
            |...|.:|..|  .:|:.|    :||                 ...|.::..:|.|:|||:.|||
  Rat    11 PKKEEPTEEEPTASKKSTDPTSLSWGFKTREVRITKISSHFQAKKTENILILVAFSIGLGSTWRF 75

  Fly    78 PFTALENGGGAFLIPYLVVLFVVGKPIYYMEMLLGQFSSRGIVQVF-DFAPLMRGVGYAQLLALG 141
            |:...:||||:||:.||::|.::|.|:.||||::||:.....::.: ...|.:.||||:.:||..
  Rat    76 PYLCHQNGGGSFLLMYLILLLLLGIPLMYMEMVIGQWLRVDNIRAWKHLVPWLSGVGYSSMLACA 140

  Fly   142 VLATYYASVMALTLRYFFDSFASELPWSFCREEWGDGCVSASGGQPLQGQLSRNFSSST------ 200
            ::..|.:::::.:|.|...||....||..|                   .|.:|||:|.      
  Rat   141 LVILYNSALVSWSLFYLGQSFDYPTPWENC-------------------PLVKNFSTSDISCLRT 186

  Fly   201 ---QLYLQRIVLNETDSLEEGIGYPSGSLALMLGISWLTVTLIIIRGVKSSGKAAYVLALFPYVV 262
               |.:....||..:|.:||||.....::.|.|..:|..:.:.::..:|.|........|||.|:
  Rat   187 EPHQFFWYHTVLRASDQIEEGIEVLVLNVTLCLFATWFFLYITMVTRIKISVLMMIFSILFPNVL 251

  Fly   263 MFILLVRALTLPGAYDGVMYFLTPQWEKLLEPQVWYNAVTQVFFSLAVCFGVIIMYSSYNRFGHN 327
            :|........:.|..|.:...:|.:...|.....|..|...|.:||.:..|.||.:|||...|.|
  Rat   252 LFCFFTHIFFVKGVRDSLKRLVTTELSILASLDAWRQAGGHVLYSLGLGMGTIITFSSYQTRGEN 316

  Fly   328 VYRDANIVTTLDTFTSLLSGVIIFGILGNLAHESGT--------------------------KDI 366
            ..:.|:.|..::..|||||..:||.:||.....|||                          |||
  Rat   317 YIKWASFVAMVNLMTSLLSSSVIFLMLGFWIENSGTPCVESNVSNLLSLIANGVLPQVAWPPKDI 381

  Fly   367 -----------------------------ASVV------KAGPGLAFISYPDAIAKFKMFP--QV 394
                                         .|::      ..|||||::::..||.   :||  ..
  Rat   382 IHRSPLEYLDWISQLPKNIRNEVAHFTLPCSILVQKEKFMEGPGLAYVAFSQAIT---LFPGSSF 443

  Fly   395 FSLLFFAMLFMLGVGSNVGMVSCIMTVLKDQFVNV----KLWIIVVSLSVIGFLVGLIYITPGGQ 455
            ::::||..|.::|:|:...:|..|...|:.....:    ||..:::.|.  |||..|::.:..|.
  Rat   444 WAIIFFMSLVIMGLGTMTTLVEGIALSLQKSISTLEKHPKLVPVIICLG--GFLGSLVFSSRPGS 506

  Fly   456 HIITLMDFHGVTFVSLVSAIFELIAVGWIYGTKRLCQDAEYMLNIKTSNYYRICWSIVT-P--LV 517
            :::.|.|.|.|..|.::...|:.:::.|:||.||...:....|.......:...||.|| |  ||
  Rat   507 YVVFLFDDHLVPMVLIMIVAFQNLSLAWVYGIKRFRAEMFGQLGRLVWAPFTFLWSYVTLPTLLV 571

  Fly   518 MLVILVYSLLTMRPLSY------NGQEFPLVYR--VVGWCVSGCIIGQL--------FYWAGYAN 566
            :|.|...:|.....|||      ..||....|:  .:||.....::..|        .:|  |.:
  Rat   572 LLTIYFLNLYFSESLSYVSWNNSMSQEVKQPYQRIALGWVTFLSVLALLPIPMYPLQHWW--YLD 634

  Fly   567 -------FKQPKGSLKS------------------RINNSIKPHSDW-GPSDPKKLMDYQMFLRN 605
                   .::|..|.|:                  .:.|..|..:.: ..:.|:.|::.|:.:..
  Rat   635 DQIICETIEKPLSSKKTVTVPKRVTQWPVHPMRKLTLRNQEKSKALFQSKTPPEALLNPQILITK 699

  Fly   606 KDEEN 610
            |..||
  Rat   700 KGSEN 704

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4476NP_648293.1 SLC6sbd 52..526 CDD:271359 149/574 (26%)
RGD1562492NP_001102616.1 SLC5-6-like_sbd 50..621 CDD:382020 155/594 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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