DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4476 and blot

DIOPT Version :9

Sequence 1:NP_648293.1 Gene:CG4476 / 39056 FlyBaseID:FBgn0035969 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_524125.2 Gene:blot / 39939 FlyBaseID:FBgn0027660 Length:976 Species:Drosophila melanogaster


Alignment Length:636 Identity:145/636 - (22%)
Similarity:252/636 - (39%) Gaps:137/636 - (21%)


- Green bases have known domain annotations that are detailed below.


  Fly    34 LLPMALESSELSPDRKARDNWGSSLEFLMSCIALSVGLGNVWRFPFTALENGGGAFLIPYLVVLF 98
            ||| |:|      |...:....|....|:.|:.|::...||.||| ..|:..|.|:|:||:|:||
  Fly   202 LLP-AVE------DESNKQTKCSVFRGLVLCLCLNLSYANVVRFP-RELDRYGSAYLVPYVVLLF 258

  Fly    99 VVGKPIYYMEMLLGQFSSRGIVQVFDFAPLMRGVGYAQLLALGVLATYYASVMALTLRYFFDSFA 163
            :||.|:..:|:.:|||..:|....:..:|:.:|.......| ..|:..:.|:.|:....:...||
  Fly   259 LVGLPMVLLEISVGQFLGQGAAHTWRASPIFKGACMISRFA-SWLSAIWVSLQAVLALAYIGMFA 322

  Fly   164 S-ELPWSFCREEWGDGCVSASGGQPLQGQLSRNFSSSTQLYLQRIVLNETDSLEEGIGYPSGSLA 227
            | :||:..|.     |.|...    |.|.|....|....|.|..:.....:.|..|:     ..|
  Fly   323 SNDLPFRECA-----GPVKLR----LSGYLLTGTSGQECLQLTFLTPFWRNPLYFGL-----LAA 373

  Fly   228 LMLGISWLTVTLIIIRGVKSSGKAAYVLALFPYVVMFILLVRALTLPGAYDGVMYFLTPQWE--- 289
            .::|: |: |.::.....|...::.:|..|       :.||...||.|            ||   
  Fly   374 GLIGL-WI-VVMLCTHNAKILRRSIFVFGL-------VGLVLLCTLTG------------WEVRN 417

  Fly   290 ----------------KLLEPQVWYNAVTQVFFSLAVCFGVIIMYSSYNRFGHNVYRDANIVTTL 338
                            .|.|..:|:||:.||.||:...||.:.|.:     |..:|:...:.|::
  Fly   418 SFSRHYFPELWGFDSNLLAESNIWFNALMQVLFSVNCGFGALPMIT-----GKFLYKGDAVRTSV 477

  Fly   339 D--TFTSLLSGVIIFGILGNLAHESGTKDIASVVKAGPGLAFISYPDAI-----AKFKMFPQVFS 396
            .  .|..|::.:.:  .|..:..:..:....::.:..|..|.  |...:     ....:...:..
  Fly   478 VYLCFNLLINAIAV--TLFMVQFDLSSNGFQNMEELKPLTAI--YDRVLNGSREGDSHLLQHLVP 538

  Fly   397 LLFFAMLFMLGVGSNVGMVSCIMTVLKDQFVNVKL------WIIVVSLSVIGFLVGLIYITPGGQ 455
            .|.:|::.:      ..|||..:.|    :.:.:|      ::|    .:||.:|.:|.......
  Fly   539 SLIYALIIL------SAMVSITVAV----YTSTRLVPRRPNYVI----CLIGLVVAVISFAAPKF 589

  Fly   456 HIITLMDFHGVTFVSLVSAIFELIAVGWIYGTKRLCQDAEYMLNIKTSNYYRICWSIVTPLVMLV 520
            .|..::|...|..:.:.:.:|||||:.||||.|.:..|.|:.:.......:...| ::.|.::..
  Fly   590 LIARVLDSRLVGTMVVTALVFELIAITWIYGAKNIYTDLEFSIGRPIFRVWMWLW-VICPAILTG 653

  Fly   521 ILV--------YSLLTMRPLSYNGQEFPLVYRVVGWCVSGCIIGQLFYWAGYANFKQPKGSLKSR 577
            |||        |.||.    .|..:..|:::.:....:..|:  |:|....|..|        ..
  Fly   654 ILVWWCADDDQYDLLA----EYLPRWAPILFVLAVIVIIACV--QIFRQVEYNFF--------GM 704

  Fly   578 INNSIKPHSDWGPSDPKKLMDYQMFLRNKDEENSKNVNRRCVCYTAGDRIF 628
            |..:.||..:|||:||.....::.:              |.||...|.|.|
  Fly   705 ICEASKPAKEWGPADPLARHSWKQW--------------RSVCQDTGRRDF 741

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4476NP_648293.1 SLC6sbd 52..526 CDD:271359 116/514 (23%)
blotNP_524125.2 SLC5-6-like_sbd 219..659 CDD:271356 114/500 (23%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11616
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
32.910

Return to query results.
Submit another query.