DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4476 and List

DIOPT Version :9

Sequence 1:NP_648293.1 Gene:CG4476 / 39056 FlyBaseID:FBgn0035969 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_611364.2 Gene:List / 37157 FlyBaseID:FBgn0034381 Length:564 Species:Drosophila melanogaster


Alignment Length:560 Identity:292/560 - (52%)
Similarity:394/560 - (70%) Gaps:12/560 - (2%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 LESSELS--PDRKARDNWGSSLEFLMSCIALSVGLGNVWRFPFTALENGGGAFLIPYLVVLFVVG 101
            ||.|:.|  |..|..:.||:.||||.|||:|||||||:||||:.|.:||||.|:||||:.|.|:|
  Fly     4 LEISKKSEKPAEKPAEQWGNGLEFLFSCISLSVGLGNIWRFPYIAFQNGGGTFVIPYLIALLVIG 68

  Fly   102 KPIYYMEMLLGQFSSRGIVQVFDFAPLMRGVGYAQLLALGVLATYYASVMALTLRYFFDSFASEL 166
            :|:||:|:.||||:.||:|:.||.|||::||...|:||.....|||:|:||||||::..||.|||
  Fly    69 RPVYYLEISLGQFTGRGVVKAFDMAPLLKGVALGQVLATAASITYYSSIMALTLRFWLASFGSEL 133

  Fly   167 PWSFCREEWGDGCVSASGGQPLQGQLSRNFSSSTQLYLQRIVLNETDSLEEGIGYPSGSLALMLG 231
            |||.|.|.||..|...:      .|.|....|..|||.:|.:|:|..:::.|:..|:..|...|.
  Fly   134 PWSRCWESWGTDCHDGN------AQNSSGKMSPAQLYFEREILHEVPNIDNGLSLPNWQLVACLA 192

  Fly   232 ISWLTVTLIIIRGVKSSGKAAYVLALFPYVVMFILLVRALTLPGAYDGVMYFLTPQWEKLLEPQV 296
            |:||.:..::|||:||||||||.|.:|||||:.|||:||:|||||.||::||..|||.:||.|.|
  Fly   193 IAWLVIGGVLIRGIKSSGKAAYFLGVFPYVVLLILLLRAVTLPGAIDGIIYFFKPQWRELLNPLV 257

  Fly   297 WYNAVTQVFFSLAVCFGVIIMYSSYNRFGHNVYRDANIVTTLDTFTSLLSGVIIFGILGNLAHES 361
            ||.||||||||||:|||.:|.|:|||.|..|||.|..|:||:|:.:|:::|.|.||||||||.|:
  Fly   258 WYAAVTQVFFSLAICFGTLITYASYNNFNRNVYNDIVIITTMDSCSSIIAGCITFGILGNLARET 322

  Fly   362 GTKDIASVVKAGPGLAFISYPDAIAKFKMFPQVFSLLFFAMLFMLGVGSNVGMVSCIMTVLKDQF 426
            |..||.||||.|.||||||||:|||||:..||:|::|||.|||:||:||.|||.|||:.|::|||
  Fly   323 GNPDIGSVVKGGAGLAFISYPEAIAKFEYVPQMFAVLFFLMLFVLGIGSTVGMGSCILRVIRDQF 387

  Fly   427 --VNVKLWIIVVSLSVIGFLVGLIYITPGGQHIITLMDFHGVTFVSLVSAIFELIAVGWIYGTKR 489
              .:..:|.:...|:|:||.|.::|:|||||.|:.|:||:||:|.:|:.||.||:||.||||..|
  Fly   388 GLRSPPIWKLASGLTVLGFSVSIVYMTPGGQFILNLVDFYGVSFTALILAIGELVAVAWIYGVNR 452

  Fly   490 LCQDAEYMLNIKTSNYYRICWSIVTPLVMLVILVYSLLTMRPLSYNGQEFPLVYRVVGWCVSGCI 554
            .|:|.::|:.|:|..|:|:||..:||.:|..:|:|.||.|..|.|.|..:|.:..|.|..::...
  Fly   453 FCEDIKFMMGIETGWYWRLCWRFITPGLMTAVLIYMLLDMSALEYKGVGYPTLAHVFGCFLATLG 517

  Fly   555 IGQLFYWAGYANFKQ--PKGSLKSRINNSIKPHSDWGPSD 592
            :.||..||.||.:|:  ..||...||..:.||...|||::
  Fly   518 LIQLPGWAIYAIYKKRGHNGSFWQRIRAACKPSDTWGPAN 557

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4476NP_648293.1 SLC6sbd 52..526 CDD:271359 261/475 (55%)
ListNP_611364.2 SLC6sbd 19..489 CDD:271359 261/475 (55%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C45469622
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D14202at7147
OrthoFinder 1 1.000 - - FOG0008552
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - P PTHR11616
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
65.850

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