DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4476 and Slc6a5

DIOPT Version :9

Sequence 1:NP_648293.1 Gene:CG4476 / 39056 FlyBaseID:FBgn0035969 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_976079.1 Gene:Slc6a5 / 171148 RGDID:621824 Length:799 Species:Rattus norvegicus


Alignment Length:626 Identity:216/626 - (34%)
Similarity:340/626 - (54%) Gaps:59/626 - (9%)


- Green bases have known domain annotations that are detailed below.


  Fly    28 ALLKPSLLPMALESSELSPDRKARDNWGSSLEFLMSCIALSVGLGNVWRFPFTALENGGGAFLIP 92
            ::|..|:....:...|...:.|||.||.|.|:|::|.:..:||||||||||:.|.:|||||||||
  Rat   170 SVLPGSVATTTIPEDEQGDENKARGNWSSKLDFILSMVGYAVGLGNVWRFPYLAFQNGGGAFLIP 234

  Fly    93 YLVVLFVVGKPIYYMEMLLGQFSSRGIVQVFDFAPLMRGVGYAQLLALGVLATYYASVMALTLRY 157
            ||::|.:.|.||:::|:.||||:|:|.|.|:...|.::|.|.|.|:...::|.||..::..||.|
  Rat   235 YLMMLALAGLPIFFLEVSLGQFASQGPVSVWKAIPALQGCGIAMLIISVLIAIYYNVIICYTLFY 299

  Fly   158 FFDSFASELPWSFCREEWG------------DGCVSASGGQP---------------------LQ 189
            .|.||.|.|||..|...|.            |.||  .|..|                     ..
  Rat   300 LFASFVSVLPWGSCNNPWNTPECKDKTKLLLDSCV--IGDHPKIQIKNSTFCMTAYPNLTMVNFT 362

  Fly   190 GQLSRNFSSSTQLYLQRIVLNETDSLEEGIGYPS---GSLALMLGISWLTVTLIIIRGVKSSGKA 251
            .|.::.|.|.::.|.:..||    .:..||.||.   ..|...|.::|:.|...:.:|:|:|||.
  Rat   363 SQANKTFVSGSEEYFKYFVL----KISAGIEYPGEIRWPLPFCLFLAWVIVYASLAKGIKTSGKV 423

  Fly   252 AYVLALFPYVVMFILLVRALTLPGAYDGVMYFLTPQWEKLLEPQVWYNAVTQVFFSLAVCFGVII 316
            .|..|.|||||:.|||:|.:|||||..|:.||:||:||||.:..||.:|.||:||||:..:|.:|
  Rat   424 VYFTATFPYVVLVILLIRGVTLPGAGAGIWYFITPKWEKLTDATVWKDAATQIFFSLSAAWGGLI 488

  Fly   317 MYSSYNRFGHNVYRDANIVTTLDTFTSLLSGVIIFGILGNLAHESGTKDIASVVKAGPGLAFISY 381
            ..||||:|.:|.|||..|||..::.||:.:|.:||.::|.:|:|... :|.:|...|||:||:.|
  Rat   489 TLSSYNKFHNNCYRDTLIVTCTNSATSIFAGFVIFSVIGFMANERKV-NIENVADQGPGIAFVVY 552

  Fly   382 PDAIAKFKMFPQVFSLLFFAMLFMLGVGSNVGMVSCIMTVLKDQF---VNVKLWIIVVSLSVIGF 443
            |:|:.:..:.| .::::||.||..||:.:....:..|:|.:.|:|   :.....:..:...:..|
  Rat   553 PEALTRLPLSP-FWAIIFFLMLLTLGLDTMFATIETIVTSISDEFPKYLRTHKPVFTLGCCICFF 616

  Fly   444 LVGLIYITPGGQHIITLMDFHGVTFVSLVSAIFELIAVGWIYGTKRLCQDAEYMLNIKTSNYYRI 508
            ::|...||.||.::..|:|.:..::..::.|||||:.:.::||.:|.|:|.|.|:..:.:.::::
  Rat   617 IMGFPMITQGGIYMFQLVDTYAASYALVIIAIFELVGISYVYGLQRFCEDIEMMIGFQPNIFWKV 681

  Fly   509 CWSIVTPLVMLVILVYSLLTMRPLSYNGQEFPLVYRVVGWCVSGCIIGQLFYWAGYANFKQPKGS 573
            ||:.|||.::..||.:|.....|::|....:|....|:||.:..|.:..:........:..| |.
  Rat   682 CWAFVTPTILTFILCFSFYQWEPMTYGSYRYPNWSMVLGWLMLACSVIWIPIMFVIKMYLAP-GR 745

  Fly   574 LKSRINNSIKPHSDWGPSDPKKLMDYQMFLRNKDEENSKNV 614
            ...|:.....|..||||           ||.....|..||:
  Rat   746 FIERLKLVCSPQPDWGP-----------FLAQHRGERYKNM 775

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4476NP_648293.1 SLC6sbd 52..526 CDD:271359 189/512 (37%)
Slc6a5NP_976079.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..64
SLC6sbd_GlyT2 193..789 CDD:271389 211/603 (35%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 1 1.100 - - O PTHR11616
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
43.920

Return to query results.
Submit another query.