DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4476 and Slc6a4

DIOPT Version :9

Sequence 1:NP_648293.1 Gene:CG4476 / 39056 FlyBaseID:FBgn0035969 Length:629 Species:Drosophila melanogaster
Sequence 2:NP_034614.2 Gene:Slc6a4 / 15567 MGIID:96285 Length:630 Species:Mus musculus


Alignment Length:568 Identity:197/568 - (34%)
Similarity:327/568 - (57%) Gaps:24/568 - (4%)


- Green bases have known domain annotations that are detailed below.


  Fly    32 PSLLPMALESSELSPDRKARDNWGSSLEFLMSCIALSVGLGNVWRFPFTALENGGGAFLIPYLVV 96
            |...|.|..:......:..|:.||..::||:|.|..:|.|||:||||:...:|||||||:||.::
Mouse    60 PHSTPAATTTLVAEIHQGERETWGKKMDFLLSVIGYAVDLGNIWRFPYICYQNGGGAFLLPYTIM 124

  Fly    97 LFVVGKPIYYMEMLLGQFSSRGIVQVF-DFAPLMRGVGYAQLLALGVLATYYASVMALTLRYFFD 160
            ....|.|::|||:.|||:...|.:.:: ...|:.:|:|||..:....:|:||.:::|..|.|...
Mouse   125 AIFGGIPLFYMELALGQYHRNGCISIWKKICPIFKGIGYAICIIAFYIASYYNTIIAWALYYLIS 189

  Fly   161 SFASELPWSFCREEWGDG-CVSASGGQPLQGQLSRNFSSSTQLYLQRIV-LNETDSLEEGIGYPS 223
            ||..:|||:.|:..|..| |.:......:...| .:.|.:.:.||:.:: ::::..|:: :|..|
Mouse   190 SFTDQLPWTSCKNSWNTGNCTNYFAQDNITWTL-HSTSPAEEFYLRHVLQIHQSKGLQD-LGTIS 252

  Fly   224 GSLALMLGISWLTVTLIIIRGVKSSGKAAYVLALFPYVVMFILLVRALTLPGAYDGVMYFLTPQW 288
            ..|||.:.:.:..:...|.:|||:|||..:|.|.|||:|:.:||||..|||||:.||:::|.|.|
Mouse   253 WQLALCIMLIFTIIYFSIWKGVKTSGKVVWVTATFPYIVLSVLLVRGATLPGAWRGVVFYLKPNW 317

  Fly   289 EKLLEPQVWYNAVTQVFFSLAVCFGVIIMYSSYNRFGHNVYRDANIVTTLDTFTSLLSGVIIFGI 353
            :||||..||.:|..|:||||...|||::.::|||:|.:|.|:||.:.:.::..||.:||.:||.:
Mouse   318 QKLLETGVWVDAAAQIFFSLGPGFGVLLAFASYNKFNNNCYQDALVTSVVNCMTSFVSGFVIFTV 382

  Fly   354 LGNLAHESGTKDIASVVK-AGPGLAFISYPDAIAKFKMFPQVFSLLFFAMLFMLGVGSNVGMVSC 417
            ||.:| |...:|::.|.| |||.|.||:|.:|||.... ...|:::||.||..||:.|....:..
Mouse   383 LGYMA-EMRNEDVSEVAKDAGPSLLFITYAEAIANMPA-STFFAIIFFLMLITLGLDSTFAGLEG 445

  Fly   418 IMTVLKDQFVNV----KLW--IIVVSLSVIGFLVGLIYITPGGQHIITLMDFHGVTFVSLVSAIF 476
            ::|.:.|:|.::    :.|  :|||...::|   .|:.:|.||.:::||::.:......|..|:.
Mouse   446 VITAVLDEFPHIWAKRREWFVLIVVITCILG---SLLTLTSGGAYVVTLLEEYATGPAVLTVALI 507

  Fly   477 ELIAVGWIYGTKRLCQDAEYMLNIKTSNYYRICWSIVTPLVMLVILVYSLLT---MRPLSYNGQE 538
            |.:.|.|.||..:.|.|.:.||......::||||..::||.:|.|:...|::   :|...||   
Mouse   508 EAVVVSWFYGITQFCSDVKEMLGFSPGWFWRICWVAISPLFLLFIICSFLMSPPQLRLFQYN--- 569

  Fly   539 FPLVYRVVGWCVSGCIIGQLFYWAGYANFKQPKGSLKSRINNSIKPHS 586
            :|....::|:|:....:..:..:..|.....| |:||.||..||.|.:
Mouse   570 YPHWSIILGYCIGTSSVICIPIYIIYRLISTP-GTLKERIIKSITPET 616

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4476NP_648293.1 SLC6sbd 52..526 CDD:271359 176/483 (36%)
Slc6a4NP_034614.2 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..63 1/2 (50%)
5HT_transport_N 24..64 CDD:281488 1/3 (33%)
SLC6sbd_SERT 79..615 CDD:271399 193/546 (35%)
Interaction with RAB4A. /evidence=ECO:0000250 616..624 0/1 (0%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
43.820

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