DRSC/TRiP Functional Genomics Resources

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Protein Alignment CG4476 and slc6a1

DIOPT Version :9

Sequence 1:NP_648293.1 Gene:CG4476 / 39056 FlyBaseID:FBgn0035969 Length:629 Species:Drosophila melanogaster
Sequence 2:XP_002941943.4 Gene:slc6a1 / 100491859 XenbaseID:XB-GENE-5824076 Length:622 Species:Xenopus tropicalis


Alignment Length:584 Identity:197/584 - (33%)
Similarity:316/584 - (54%) Gaps:61/584 - (10%)


- Green bases have known domain annotations that are detailed below.


  Fly    26 GEALLKPSLLPMALESSELSPDRKARDNWGSSLEFLMSCIALSVGLGNVWRFPFTALENGGGAFL 90
            ||.|    .||...:..:...|   |..|....:||:||:..::|||||||||:...:|||||||
 Frog    53 GETL----YLPFGQKKKKADDD---RGTWKGKFDFLLSCVGYAIGLGNVWRFPYLCGKNGGGAFL 110

  Fly    91 IPYLVVLFVVGKPIYYMEMLLGQFSSRGIVQVFDFAPLMRGVGYAQLLALGVLATYYASVMALTL 155
            |||.:.|...|.|::::|..||||:|.|.:.|:..||:.:|||.|.::....|..||..::|..|
 Frog   111 IPYFLTLVFAGIPLFFLETALGQFTSIGGLGVWKLAPMFKGVGMAAVVLSFWLNIYYIVIIAWAL 175

  Fly   156 RYFFDSFASELPWSFCREEWG-DGCVSASGGQPLQGQLSRNFSSSTQLYLQRIVLNETDSLEE-- 217
            .|.|:||:|.|||..|...|. :.|.|             |:|           ||:|.:|..  
 Frog   176 YYLFNSFSSTLPWQSCDNSWNTERCFS-------------NYS-----------LNDTSNLTSAV 216

  Fly   218 -------------GIGYPSG---SLALMLGISWLTVTLIIIRGVKSSGKAAYVLALFPYVVMFIL 266
                         |:|.|..   .||..|.::|:.|...|.:||:.:||..|..|.:||.::.||
 Frog   217 TEFWERNMHQMTGGLGEPGNIRWPLACTLALAWIMVYFSIWKGVEWTGKVVYFSATYPYFMLVIL 281

  Fly   267 LVRALTLPGAYDGVMYFLTPQWEKLLEPQVWYNAVTQVFFSLAVCFGVIIMYSSYNRFGHNVYRD 331
            ..|.:|||||.||:.:::||.:.||...:||.:|.||:|||..:..|.:|...|||.|.:|:|||
 Frog   282 FFRGITLPGAMDGIRFYITPDFSKLSNSEVWMDAATQIFFSYGLGLGSLIALGSYNAFDNNIYRD 346

  Fly   332 ANIVTTLDTFTSLLSGVIIFGILGNLAHESGTKDIASVVKAGPGLAFISYPDAIAKFKMFPQVFS 396
            :.||..:::.||:.:|.:||.|:|.::|.: .|.|..:..:||||||::||.|:.:..|.| |:|
 Frog   347 SIIVCGINSTTSMFAGFVIFSIVGFMSHIT-KKPIQELAASGPGLAFLAYPQAVTQLPMSP-VWS 409

  Fly   397 LLFFAMLFMLGVGSNVGMVSCIMTVLKDQF---VNVKLWIIVVSLSVIGFLVGLIYITPGGQHII 458
            :|||:||.|||:.|....|...:|.|.|::   :..:..:.:..:..|.|::|...||.||.::.
 Frog   410 ILFFSMLVMLGLDSQFCTVEGFITALVDEYPQCLRSRKKVFIAMVCFISFIIGFSNITQGGLYVF 474

  Fly   459 TLMDFHGVTFVSLVSAI-FELIAVGWIYGTKRLCQDAEYMLNIKTSNYYRICWSIVTPLVMLVIL 522
            .|.|::..:.:.|:..: ||.:::.|.||..|..||.|.|:..:..:::::||:..||.:.|.:.
 Frog   475 KLFDYYSASGMCLLFLVFFETVSISWCYGVDRFYQDIEEMIGYQPCSWWKLCWAYFTPCICLGVF 539

  Fly   523 VYSLLTMRPLSYNGQEFPLVYRVVGWCVSGCIIGQLFYWAGYANF--KQPKGSLKSRINNSIKP 584
            .:|:..|.||:.....:|...:.:||.::   :..:.:..||..:  ...||:|:.|.....:|
 Frog   540 CFSVFEMTPLTLGRYVYPAWGQGIGWLMA---LSSMVFIPGYMLYLLLTTKGTLRQRFREMTQP 600

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4476NP_648293.1 SLC6sbd 52..526 CDD:271359 176/496 (35%)
slc6a1XP_002941943.4 SLC5-6-like_sbd 62..611 CDD:382020 192/571 (34%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 1 1.010 - - D250396at2759
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
11.010

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