DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment CG4476 and slc6a19a.2

DIOPT Version :9

Sequence 1:NP_648293.1 Gene:CG4476 / 39056 FlyBaseID:FBgn0035969 Length:629 Species:Drosophila melanogaster
Sequence 2:XP_002665492.2 Gene:slc6a19a.2 / 100334171 ZFINID:ZDB-GENE-141210-16 Length:647 Species:Danio rerio


Alignment Length:650 Identity:192/650 - (29%)
Similarity:313/650 - (48%) Gaps:109/650 - (16%)


- Green bases have known domain annotations that are detailed below.


  Fly    39 LESSELSPDRKARDNWGSSLEFLMSCIALSVGLGNVWRFPFTALENGGGAFLIPYLVVLFVVGKP 103
            ||..||. :...|..|.:..:::::|:...||||||||||:....:|||||:||:|::|.:.|.|
Zfish    22 LEKLELQ-EAGERPKWDNKAQYMLTCVGFCVGLGNVWRFPYLCQSHGGGAFMIPFLILLVLEGIP 85

  Fly   104 IYYMEMLLGQFSSRGIVQVF-DFAPLMRGVGYAQLLALGVLATYYASVMALTLRYFFDSFASELP 167
            :.::|..:||...||.|.|: ...|.:.|||.|.:|...::..||.:::|..:.|||:||...||
Zfish    86 LLHLEFAIGQRLRRGSVGVWRSINPYLLGVGIASMLVSFIVGMYYNTIIAWVMWYFFNSFQDPLP 150

  Fly   168 WSFCREEWGDGCVSASGGQPLQGQLSR-------NFSSSTQLYLQRIVLNETDSLEEGIGYPSGS 225
            ||.|               |:.|  ||       ..||....:..|..||.|..:|:     ||.
Zfish   151 WSQC---------------PING--SRTGFVSECERSSPVDYFWYRKTLNTTPHIED-----SGG 193

  Fly   226 L----ALMLGISWLTVTLIIIRGVKSSGKAAYVLALFPYVVMFILLVRALTLPGAYDGVMYFLTP 286
            |    .|.|..:|..:.:..|||::::|||.|:.:..||:|:.|.|:|.|||.|:..|:.:..||
Zfish   194 LQWWMVLSLLCAWTVLWVCCIRGIETTGKAVYITSTLPYLVLTIFLIRGLTLKGSVSGIKFLFTP 258

  Fly   287 QWEKLLEPQVWYNAVTQVFFSLAVCFGVIIMYSSYNRFGHNVYRDANIVTTLDTFTSLLSGVIIF 351
            ...:||:||.|.:|..|||||.::.||.:|.:||||...:|..:||.|::.::..||:.:.::|:
Zfish   259 DVNELLDPQTWLDAGAQVFFSFSLAFGGLIAFSSYNSVHNNCEQDAVIISIINGMTSIYAAIVIY 323

  Fly   352 GILGNLAHE------SGTKDIASVVKA-------------------------------------- 372
            .|:|..|.|      :|  :|.|::.|                                      
Zfish   324 SIIGFRATERFDDCLNG--NILSLLNAFDLPEGSIIEGNYTEAIQQLNISRPDIIQELQLKTCDM 386

  Fly   373 ---------GPGLAFISYPDAIAKFKMFPQVFSLLFFAMLFMLGVGSNVGMVSCIMTVLKDQFVN 428
                     |.|||||.:.:||.|..:.| ::|:|||.|||.||:.:..|.:..::..|:|..:.
Zfish   387 QTFLSQGVEGTGLAFIVFTEAITKMPVSP-LWSVLFFIMLFCLGLSTMFGSIEGVVVPLQDLDIL 450

  Fly   429 VKLW---IIVVSLSVIGFLVGLIYITPGGQHIITLMDFHGVTFVSLVSAIFELIAVGWIYGTKRL 490
            .|.|   .....:.|:.|...:|:....|::.:.|.|...|:...|:.|..|::||.::||..|.
Zfish   451 PKNWPKEAYTALVCVVSFAFAIIFAQGSGEYWLALFDGFAVSIPLLIIAFCEMMAVSYVYGIDRF 515

  Fly   491 CQDAEYMLNIKTSNYYRICWSIVTPLVMLVILVYSLLT--MRPLSY-----NGQEFPL--VYRVV 546
            ..|.::|:..|.:.:::..|.:::||::|||.::..:|  .:.|:|     ..:.||.  |....
Zfish   516 NDDIKFMIGHKPNIFWQATWRLISPLIVLVIFLFYFVTTVSKKLTYIAWDPESENFPTLSVLPYP 580

  Fly   547 GWCVSGCIIGQLFYWAGYANFKQPKGSLKSRI-NNSIKPHSDWGPSDPKKLMDYQMFLRNKDEEN 610
            ||     |...:|..||......|..:|...| |...|.........|..:.|....:...::.|
Zfish   581 GW-----ISAIIFILAGIPVLVIPTVALVRLIRNRCCKKEETHATETPYSISDRVQMMEETEQNN 640

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
CG4476NP_648293.1 SLC6sbd 52..526 CDD:271359 167/541 (31%)
slc6a19a.2XP_002665492.2 SLC5-6-like_sbd 33..613 CDD:294310 184/609 (30%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_COG0733
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
32.810

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