DRSC/TRiP Functional Genomics Resources

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Protein Alignment Rdl and glra4a

DIOPT Version :10

Sequence 1:NP_001261617.1 Gene:Rdl / 39054 FlyBaseID:FBgn0004244 Length:608 Species:Drosophila melanogaster
Sequence 2:NP_001429032.1 Gene:glra4a / 83413 ZFINID:ZDB-GENE-010410-3 Length:457 Species:Danio rerio


Alignment Length:540 Identity:172/540 - (31%)
Similarity:264/540 - (48%) Gaps:150/540 - (27%)


- Green bases have known domain annotations that are detailed below.


  Fly    70 YDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGS 134
            ||.|:|||:.||||.|...:::.|..|::|..||:.|:.:.||.|.||||||.:.|.. :|.:..
Zfish    58 YDARIRPNFKGPPVNVTCNIFINSFGSITETTMDYRLNVFLRQQWNDPRLAYSEYPDA-SLDLDP 121

  Fly   135 EFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLC 199
            ..:.:||.||.||.|||.:.||..||.|:.:|:..:|::..|||||:..||||:|:.||||.|.|
Zfish   122 SMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFQNGNVLYSIRLTLILSCPMDLKNFPMDIQTC 186

  Fly   200 HIEIESFGYTMRDIRYFWRDGLSSVGMSSEVELPQF-----RVLGHRQRATEINLTTGNYSRLAC 259
            .:::|||||||.|:.:.|... :.|.::.::.||||     :.||:..:    :..||.::.:..
Zfish   187 TMQLESFGYTMNDLIFEWLSD-NPVQVADDLTLPQFVLKEEKDLGYCTK----HYNTGKFTCIEV 246

  Fly   260 EIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKI 324
            :....|.|||||||:||||.||||:||||||:|.:|.||||.||:||||||||..|.:.|:|||:
Zfish   247 KFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKV 311

  Fly   325 SYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMAIQKIAEQKKQQLDGANQQQANP 389
            ||||:||:::..|.:.|||:|||||.|.::::    :.:.|:.::|  :|::|:::....:::  
Zfish   312 SYVKAIDIWMAVCLLFVFAALLEYAAVNFVSR----QHKEFIRLRK--KQRRQRIEEELVRES-- 368

  Fly   390 NPNANVGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGHPHAPKQTVSNRPIG 454
                                                     .|.:...:|..|.           
Zfish   369 -----------------------------------------RGFYFRGYGLGHC----------- 381

  Fly   455 FSNIQQNVGT--RGCSIVGPLFQEVRFKVHDPKAHSKGGTLENTVNGGRGGPQSHGPGPGQGGGP 517
               :|...||  .|.|:..|                                             
Zfish   382 ---LQTKDGTAVEGSSVFAP--------------------------------------------- 398

  Fly   518 PGGGGGGGGGGGPPEGGGDPEAAVPAHLLHPGKVKKVKDINKLLGITPSDIDKYSRIVFPVCFVC 582
                        ||          |..:|:.|:..:.:.:::     ...||..||.|||:.|:.
Zfish   399 ------------PP----------PVQVLYDGEAVRKRFVDR-----AKRIDTISRAVFPLSFLI 436

  Fly   583 FNLMYWIIY--LHVSDVVAD 600
            ||:.|||.|  |...|:.|:
Zfish   437 FNVFYWITYKVLRHEDIHAN 456

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RdlNP_001261617.1 LGIC_ECD_GABAR_RDL-like 83..266 CDD:349809 69/187 (37%)
Cys-loop 185..199 CDD:349809 9/13 (69%)
Neur_chan_memb 274..588 CDD:460753 79/315 (25%)
glra4aNP_001429032.1 None

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