Protein Alignment Rdl and glra4a

DIOPT Version :9

• Sequence 1: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Sequence 2: XP_005169655.1
• Gene: glra4a / 83413
• ZFINID: ZDB-GENE-010410-3
• Length: 457
• Species: Danio rerio
• Alignment Length: 540
• Identity: 172/540 - (31%)
• Similarity: 264/540 - (48%)
• Gaps: 150/540 - (27%)

  Fly    70 YDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGS 134
            ||.|:|||:.||||.|...:::.|..|::|..||:.|:.:.||.|.||||||.:.|.. :|.:..
Zfish    58 YDARIRPNFKGPPVNVTCNIFINSFGSITETTMDYRLNVFLRQQWNDPRLAYSEYPDA-SLDLDP 121

  Fly   135 EFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLC 199
            ..:.:||.||.||.|||.:.||..||.|:.:|:..:|::..|||||:..||||:|:.||||.|.|
Zfish   122 SMLDSIWKPDLFFANEKGANFHEVTTDNKLLRIFQNGNVLYSIRLTLILSCPMDLKNFPMDIQTC 186

  Fly   200 HIEIESFGYTMRDIRYFWRDGLSSVGMSSEVELPQF-----RVLGHRQRATEINLTTGNYSRLAC 259
            .:::|||||||.|:.:.|... :.|.::.::.||||     :.||:..:    :..||.::.:..
Zfish   187 TMQLESFGYTMNDLIFEWLSD-NPVQVADDLTLPQFVLKEEKDLGYCTK----HYNTGKFTCIEV 246

  Fly   260 EIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKI 324
            :....|.|||||||:||||.||||:||||||:|.:|.||||.||:||||||||..|.:.|:|||:
Zfish   247 KFHLERQMGYYLIQMYIPSLLIVILSWVSFWINMDAAPARVGLGITTVLTMTTQSSGSRASLPKV 311

  Fly   325 SYVKSIDVYLGTCFVMVFASLLEYATVGYMAKRIQMRKQRFMAIQKIAEQKKQQLDGANQQQANP 389
            ||||:||:::..|.:.|||:|||||.|.::::    :.:.|:.::|  :|::|:::....:::
Zfish   312 SYVKAIDIWMAVCLLFVFAALLEYAAVNFVSR----QHKEFIRLRK--KQRRQRIEEELVRES-- 368

  Fly   390 NPNANVGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGHPHAPKQTVSNRPIG 454
                                                     .|.:...:|..|.
Zfish   369 -----------------------------------------RGFYFRGYGLGHC----------- 381

  Fly   455 FSNIQQNVGT--RGCSIVGPLFQEVRFKVHDPKAHSKGGTLENTVNGGRGGPQSHGPGPGQGGGP 517
               :|...||  .|.|:..|
Zfish   382 ---LQTKDGTAVEGSSVFAP--------------------------------------------- 398

  Fly   518 PGGGGGGGGGGGPPEGGGDPEAAVPAHLLHPGKVKKVKDINKLLGITPSDIDKYSRIVFPVCFVC 582
                        ||          |..:|:.|:..:.:.:::     ...||..||.|||:.|:.
Zfish   399 ------------PP----------PVQVLYDGEAVRKRFVDR-----AKRIDTISRAVFPLSFLI 436

  Fly   583 FNLMYWIIY--LHVSDVVAD 600
            ||:.|||.|  |...|:.|:
Zfish   437 FNVFYWITYKVLRHEDIHAN 456

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	69/187 (37%)
		Neur_chan_memb	274..588	CDD:397193	79/315 (25%)
glra4a	XP_005169655.1	LIC	27..445	CDD:273305	168/527 (32%)
		Neur_chan_LBD	48..254	CDD:280998	79/201 (39%)
		Neur_chan_memb	261..442	CDD:280999	79/315 (25%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3644
Hieranoid	0	0.000	Not matched by this tool.
Homologene	1	1.000	-	-		H69070
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X271
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	4	3.810