Protein Alignment Rdl and gabra5

DIOPT Version :9

• Sequence 1: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Sequence 2: XP_005166139.1
• Gene: gabra5 / 799124
• ZFINID: ZDB-GENE-081104-30
• Length: 453
• Species: Danio rerio
• Alignment Length: 590
• Identity: 171/590 - (28%)
• Similarity: 253/590 - (42%)
• Gaps: 166/590 - (28%)

  Fly    22 TIWLAINMALIAQETGHKRIHTVQAATGGGSMLGDVNISA---ILDSFSVSYDKRVRPNYGGPPV 83
            ::|:.:   |....|.|..:......|...|.|.| ||:.   |||.....||.|:||..|....
Zfish    13 SLWVGV---LFMTLTCHLSLSQSTTGTPKESELND-NITVFTRILDGLLDGYDNRLRPGLGEKVT 73

  Fly    84 EVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFV 148
            |:...::|.|...:|:.:|::|:|.:|||.|.|.||.: |.| :|.|.:.:....|||.|||||:
Zfish    74 EIKTNIFVTSFGPVSDTEMEYTIDVFFRQSWKDERLCF-KGP-MEMLPLNNLLASNIWTPDTFFL 136

  Fly   149 NEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDI 213
            |.|:|..|..||.|:.:|:...|::..::||||:|.|||.|:.||||...|.::..|:.|.:.::
Zfish   137 NGKKSIAHNMTTPNKLLRLKDDGTLLYTMRLTISAECPMQLEDFPMDAHACPLKFGSYAYPISEV 201

  Fly   214 RYFWRDGL-SSVGMSSE-VELPQFRVLGHRQRATEINLTTGNYSRLACEIQFVRSMGYYLIQIYI 276
            .|.|..|. .||.::.| ..|.|:.::||.....:|:.:.|.|:.:.......|.:||::||.|:
Zfish   202 VYKWTKGPGKSVVVAEEGSRLNQYHLIGHTAGTEDISTSRGQYTVMMAHFYLKRKIGYFVIQTYM 266

  Fly   277 PSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMV 341
            |..:.||:|.|||||||.:.|||...|||||||||||..|...:|||::|..::|.::..|:..|
Zfish   267 PCFMTVILSQVSFWLNRESVPARTVFGVTTVLTMTTLSISARNSLPKVAYATAMDWFIAVCYAFV 331

  Fly   342 FASLLEYATVGYMAKRIQMRKQRFMAIQKIAEQKKQQLDGANQQQANP-----NPN---ANVGGP 398
            |::|:|:|||.|..||            ..|...|:.|:....::.:|     .||   ||:...
Zfish   332 FSALIEFATVNYFTKR------------SWAWDGKKALEAQQPKKKDPLALSKKPNNFTANINKD 384

  Fly   399 GGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGHPHAPKQTVSNRPIGFSNIQQNVG 463
            ..:                                            .|:||.
Zfish   385 AAI--------------------------------------------STISNS------------ 393

  Fly   464 TRGCSIVGPLFQEVRFKVHDPKAHSKGGTLENTVNGGRGGPQSHGPGPGQGGGPPGGGGGGGGGG 528
                       ..|:.|..:.|                       |.|
Zfish   394 -----------TTVQLKSAEAK-----------------------PAP----------------- 407

  Fly   529 GPPEGGGDPEAAVPAHLLHPGKVKKVKDINKLLGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLH 593
                   ||:                |..|.:     |.|||.|||||||.|..|||:||..||:
Zfish   408 -------DPK----------------KTYNSV-----SKIDKMSRIVFPVLFGTFNLVYWATYLN 444

  Fly   594 VSDVV 598
            ...|:
Zfish   445 REPVI 449

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	64/184 (35%)
		Neur_chan_memb	274..588	CDD:397193	78/321 (24%)
gabra5	XP_005166139.1	Neur_chan_LBD	19..442	CDD:332142	167/572 (29%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_KOG3644
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR18945
Phylome	0	0.000	Not matched by this tool.
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	3	3.000