Protein Alignment Rdl and Gabrg3

DIOPT Version :9

• Sequence 1: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Sequence 2: NP_077346.3
• Gene: Gabrg3 / 79211
• RGDID: 621735
• Length: 467
• Species: Rattus norvegicus
• Alignment Length: 546
• Identity: 147/546 - (26%)
• Similarity: 239/546 - (43%)
• Gaps: 129/546 - (23%)

  Fly    56 DVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSISSLSEVKMDFTLDFYFRQFWTDPRLA 120
            |.:::.||:.....|||::||:.|..|..:.|.:||.||..:|.:.|::.:|.:|.|.|||.||.
  Rat    44 DTDVTLILNKLLREYDKKLRPDIGIKPTVIDVDIYVNSIGPVSSINMEYQIDIFFAQTWTDSRLR 108

  Fly   121 YRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATTSNEFIRVHHSGSITRSIRLTITASC 185
            :...  ::.|::.|..:..||:|||.|.|.|.:..|..||.|:.:|:.:.|.|..::||||.|.|
  Rat   109 FNST--MKILTLNSNMVGLIWIPDTIFRNSKTAEAHWITTPNQLLRIWNDGKILYTLRLTINAEC 171

  Fly   186 PMNLQYFPMDRQLCHIEIESFGYTMRDIRYFWRDGLSSVGMSSEVELPQFRVLGHRQRATEINLT 250
            .:.|..||||...|.:...|:||...::.|.||.............|.||..:|.|.....:..:
  Rat   172 QLQLHNFPMDAHACPLTFSSYGYPKEEMIYRWRKNSVEAADQKSWRLYQFDFMGLRNTTEIVTTS 236

  Fly   251 TGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFWLNRNATPARVALGVTTVLTMTTLMS 315
            .|:|..:....:..|.|||:.||.|||..|.|::||||||:.::|||||..||:|||||||||.:
  Rat   237 AGDYVVMTIYFELSRRMGYFTIQTYIPCILTVVLSWVSFWIKKDATPARTTLGITTVLTMTTLST 301

  Fly   316 STNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMA--KRIQMRKQRFMAIQKIAEQKKQQ 378
            ....:||::|||.::|:::..||:.|||:|:||||:.|.:  ::..:||::...:
  Rat   302 IARKSLPRVSYVTAMDLFVTVCFLFVFAALMEYATLNYYSSCRKPTIRKKKTSLL---------- 356

  Fly   379 LDGANQQQANPNPNANVGGPGGVGVGPGGPGGPGGGVNVGVGMGMGPEHGHGHGHHAHSHGHPHA 443
                       :|::....|..:.:                         ....:::.....|..
  Rat   357 -----------HPDSTRWIPDRISL-------------------------QAPSNYSLLDMRPPP 385

  Fly   444 PKQTVSNRPIGFSNIQQN-----VGTRGCSIVGPLFQEVRFKVHDPKAHSKGGTLENTVNGGRGG 503
            |.....|..:.:...:..     :..:.|......::|           .|.|:...    ||
  Rat   386 PVMITLNNSMYWQEFEDTCVYECLDGKDCQSFFCCYEE-----------CKSGSWRR----GR-- 433

  Fly   504 PQSHGPGPGQGGGPPGGGGGGGGGGGPPEGGGDPEAAVPAHLLHPGKVKKVKDINKLLGITPSDI 568
                                                      :|               |..|::
  Rat   434 ------------------------------------------IH---------------IDVSEL 441

  Fly   569 DKYSRIVFPVCFVCFNLMYWIIYLHV 594
            |.|||:.||..|:.|||:||:.||::
  Rat   442 DSYSRVFFPTSFLLFNLVYWVGYLYL 467

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	57/182 (31%)
		Neur_chan_memb	274..588	CDD:397193	70/320 (22%)
Gabrg3	NP_077346.3	Neur_chan_LBD	48..253	CDD:280998	67/206 (33%)
		LIC	50..464	CDD:273305	144/535 (27%)
		Neur_chan_memb	260..461	CDD:280999	70/320 (22%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR18945
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	3	3.010