Protein Alignment Rdl and Gabre

DIOPT Version :9

• Sequence 1: NP_001261617.1
• Gene: Rdl / 39054
• FlyBaseID: FBgn0004244
• Length: 608
• Species: Drosophila melanogaster
• Sequence 2: NP_075579.1
• Gene: Gabre / 65191
• RGDID: 68320
• Length: 989
• Species: Rattus norvegicus
• Alignment Length: 580
• Identity: 142/580 - (24%)
• Similarity: 235/580 - (40%)
• Gaps: 138/580 - (23%)

  Fly    31 LIAQETGHKRIHTVQAATGGGSMLGDVNISAILDSFSVSYDKRVRPNYGGPPVEVGVTMYVLSIS 95
            |.|:||.....||.:...|..:     ..|.||::...:||.::||:.|..|..|.|.::|.|:.
  Rat   532 LPARETELTADHTTERPRGKLT-----RASQILNTILSNYDHKLRPSIGEKPTVVTVKVFVNSLG 591

  Fly    96 SLSEVKMDFTLDFYFRQFWTDPRLAYRKRPGVETLSVGSEFIKNIWVPDTFFVNEKQSYFHIATT 160
            .:|.:.|::::|..|.|.|.|.||.|...  .|||.:....:..:|:|||||.|.|::..:..|.
  Rat   592 PISILDMEYSIDIIFYQTWYDERLRYNDT--FETLILHGNVVSQLWIPDTFFRNSKRTQEYDITI 654

  Fly   161 SNEFIRVHHSGSITRSIRLTITASCPMNLQYFPMDRQLCHIEIESFGYTMRDIRYFWRDGLSSVG 225
            .|:...:|..|.:..::|:||.|.|.:::..||||...|.:...||.|...::.|.|.:....:.
  Rat   655 PNQMALIHKDGKVLYTVRMTIDARCSLHMLNFPMDSHSCPLSFSSFSYDEHEMIYKWENFKLKID 719

  Fly   226 MSSEVELPQFRVLGHRQRATEINLTTGNYSRLACEIQFVRSMGYYLIQIYIPSGLIVIISWVSFW 290
            ..:..:|.:|...|...:...|:...|::..:.......|..|:.:.|.||||.:..::||||||
  Rat   720 AKNTWKLLEFDFTGVNNKTEIISTPVGDFMVMTFFFNVSRRFGFIVFQNYIPSSVTTMLSWVSFW 784

  Fly   291 LNRNATPARVALGVTTVLTMTTLMSSTNAALPKISYVKSIDVYLGTCFVMVFASLLEYATVGYMA 355
            :...|..||.::||::||||.||.:.:....|::||:.::|.|:..|||:.|.:|||:..:.::.
  Rat   785 IKIEAAAARASVGVSSVLTMATLGTFSRKNFPRVSYLTALDFYIAICFVLCFCTLLEFTVLNFLT 849

  Fly   356 KRIQMRKQRFMAIQKIAEQKKQQLDGANQQQANPNPNANVGGPGGVGVGPGGPGGPGGGVNVGVG 420
                     :..|::.|..|..|.  ....:||....|
  Rat   850 ---------YNNIERQASPKFYQF--PTNSRANARTRA--------------------------- 876

  Fly   421 MGMGPEHGHGHGHHAHSHGHPHAPKQTVSNRPIGFSNIQQNVGTRGCSIVGPLFQEVRFKVHDPK 485
                         .|.:.....|..:.           ||.|..  |.||          .::
  Rat   877 -------------RARTRARARARARQ-----------QQEVFV--CEIV----------TYE-- 903

  Fly   486 AHSKGGTLENTVNGGRGGPQSHGPG-PGQGGG---------------PPGGGGGGGGGGGPPEGG 534
                    ||...|.:..|:|..|. |.:..|               .||           .||.
  Rat   904 --------ENAEEGYQWSPRSRRPQCPWRRCGRSYVCFRVLRKYFCMVPG-----------CEGN 949

  Fly   535 GDPEAAVPAHLLHPGKVKKVKDINKLLGITPSDIDKYSRIVFPVCFVCFNLMYWIIYLHV 594
            ......:..|:..                    :|.|||::||:.|..||::||:|.|::
  Rat   950 SWQRGRICIHVYR--------------------LDNYSRVLFPITFFFFNVVYWVICLNL 989

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
Rdl	NP_001261617.1	LGIC_ECD_GABAR_RDL-like	83..266	CDD:349809	49/182 (27%)
		Neur_chan_memb	274..588	CDD:397193	70/329 (21%)
Gabre	NP_075579.1	Neur_chan_LBD	555..760	CDD:280998	58/206 (28%)
		LIC	557..983	CDD:273305	130/542 (24%)
		Neur_chan_memb	769..983	CDD:280999	70/328 (21%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	1	1.100	-	-	O	PTHR18945
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	2	2.100